| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4173 |
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| Symbol | |
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| ID | 6179530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 1218914 |
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| End bp | 1221268 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641683942 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001810853 |
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| Protein GI | 172063202 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACTCA GACCGACAGA TTCGGGGAGT TTGAGATACA GCGACATCTT CGACGCAATC
AACCGTGGCC TCATGCAGCA TGGCCGTTTG CTGACGCTGC GCACCCCGTT GGGCGATAAC
GTACTCACGC CCGTTCGCGC GAAAGGCTGG TCGAAGATCG GCCGCGACTA TCGCTGGACC
GTTGATGCGG TATCCACGCG CGACGACATC GAATTGCTCG CACTGATGCA TCAGCAGGTT
TCGTTACTGA TTCAGCAACC GGCGGCTTCC TTCTCCAACG TTGAATACCG ACCGATCCAC
GGCTTCGTGC ATCAGATCAG GCGCTTGGGA GCCGACGGCG CGCTTTCGCT TTACCAGATC
GAGTTCGCGT CGGCCCTGTT CTTCCTGGGT GAAGGTCGTG ACGATTATTA CTGGCTGGAC
TCGAACGCCA TCCAGAGCAT CAGCACCGTC TTCGACAAAT ACCCCCAGTT GCGCGGGCAC
TACCGGTTCA ATCTCAGCAA CCAGGCAAGT ACGCGCTCTT ACACGCGACA GAGCGAATCG
GATTTGAATT TCGTTCAACG CTTGCTGGAA GACGAAGGGT GGTACTTCTA TTGGGAGCAT
GCGCCCGTCA AGGATAACGA GCCGCCGAAG ACCACGCTGG TGATCGTGGA CAGCGTCTCG
GCGTTGCCGG AAGCGCACGA CGTCACGTAT TCCCGAAGCA ATGCGGGCGA TGAAATCGAC
GGCTTGACGC AGTGGGTGAT GCAGCAGACG GCGCAGCCCA CGGAATTCAA GTCCACTTCG
TTCGATCAGG ATCGGCCGGG TTCCAGTTTC GCGGCGGGTA GTTTGATGGA GGCGACCACA
TACACGGTCC AGCATTACCG TGACAAGGAA ACCCTCAGTG TTCCAGGCGT TCCTGCGACG
GTGTATGAAC CGACGACGTT GGGCTATCCG GACTCCGACA GCGGTGCCCG CCGTGCGCGG
ATTCGGACGC AGGCATGGGA GGCGATGGCC CGTCGTTTCA TCGGCGTCGG CGGGGTGCGT
TGGCTCGATG CTGGTTCGCG CTTTGTGCTG AACGACCATC CGCGTCACGA TGCACCTGAT
TCGAAGGACC GGGAGTTTCT GGCGGTCGAG ATGCACTGGT TCATCCTGAA CAACGTGCCG
TTCGCCCGTC AGTCGGAGGC ATTTCCATTC AGCCTGCAAC CGGAGTTCGA TCGCGTTCAG
GAGGAATACG AACAGGCGTC CGTGTCTCGG TCTCATGCGG ATGACGGTTC TGTCGGCTTC
TTCTTGATGA AGACAGAAGC GCAGCGTGCC GATGTCGTCT ACCGTAGTCC GCTCGAACAC
AAGAAGCCGG TGATGCAAGT CGAGCATCTG CTGGTCGGCG CACCGAACGG CGAGGAAGCG
TGGACGAACA AGAACAACGA GATTCGTGGC CGATTCGCAT GGGACCGGCA GAGTAAGCCG
GACGAGTACA ACACGTCGCC GTGGATGCGC GTCATGCAGG GCGACACCGG TGACGGCTAC
GGTGCGGTTC ATGTGCCGCG TAAGGGCGAA TGGGTCGCTA TCGGTTACTG GCAAGGCGAC
TGTGATCGCC CGTTCGTGAT GGGGCGGTTG CCTGGTGGGA CCACTCAGCA GCCGTGGCAT
TCGGATGTAC TGAAGTCGGG CCAGCAGTCG CGTGGCTTCG GCAATACCGG TGCGTACAAC
GCACTGATCC ACGACGATTC CACGCATCAG GGCGGTCAGC GGCTGACGAG TTATACCGGA
GGCACCTATC ACCTGTTCCA TCAAGGGTAC CTGATTGACC AGACGGGCAA TACGCGTGGT
GGTTATCGCG GAATCGGTTA CAAACTTCAT ACCGACGCAT TCGGTGCCAT GCGCGCGAAT
CAGGGGATGG CGATCAGCAC GCAGCACAAG TCCCCGGACG CCGAACAACT GGACGTGCGA
GAAGCACGCC AGCAACTGGC CCGTGCGGGG AATTTGGTCG ATTCGTTGTC GGAAGCCAGC
AAGGGGCATC AGGCGGCGGA CCTCAAGACC GGTCACGATG CGTTGAAGCA CTTCGCGGAC
GCACTGGAAT TGCCGCAGAC ACCTGAGGCC AAGGGTGGTC GCACGGCGGG TGGCGGCACA
GGCACCGCGA ACGCTTTCAA GGAACCCGTG ATGCTGCTGG ACAGCCCGGC GGGAATTGCG
GCGTCAACTC AGCAATCCGT GCATCTCGCG GCAGACCAAC TGCTCAATCT TGTCAGCGGT
CAGACCACGA CCGTTGCGTC GGGGCAGTCG CTGATCGTCG CGGCCCTCAA CCTGATCAGC
CTCTTTGCGC AGAACGGCGG TATGAAGGCC ATCGCCGCCA AGGGCGACAT CATATCCAGG
CGCATGCCGG TGTGA
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| Protein sequence | MALRPTDSGS LRYSDIFDAI NRGLMQHGRL LTLRTPLGDN VLTPVRAKGW SKIGRDYRWT
VDAVSTRDDI ELLALMHQQV SLLIQQPAAS FSNVEYRPIH GFVHQIRRLG ADGALSLYQI
EFASALFFLG EGRDDYYWLD SNAIQSISTV FDKYPQLRGH YRFNLSNQAS TRSYTRQSES
DLNFVQRLLE DEGWYFYWEH APVKDNEPPK TTLVIVDSVS ALPEAHDVTY SRSNAGDEID
GLTQWVMQQT AQPTEFKSTS FDQDRPGSSF AAGSLMEATT YTVQHYRDKE TLSVPGVPAT
VYEPTTLGYP DSDSGARRAR IRTQAWEAMA RRFIGVGGVR WLDAGSRFVL NDHPRHDAPD
SKDREFLAVE MHWFILNNVP FARQSEAFPF SLQPEFDRVQ EEYEQASVSR SHADDGSVGF
FLMKTEAQRA DVVYRSPLEH KKPVMQVEHL LVGAPNGEEA WTNKNNEIRG RFAWDRQSKP
DEYNTSPWMR VMQGDTGDGY GAVHVPRKGE WVAIGYWQGD CDRPFVMGRL PGGTTQQPWH
SDVLKSGQQS RGFGNTGAYN ALIHDDSTHQ GGQRLTSYTG GTYHLFHQGY LIDQTGNTRG
GYRGIGYKLH TDAFGAMRAN QGMAISTQHK SPDAEQLDVR EARQQLARAG NLVDSLSEAS
KGHQAADLKT GHDALKHFAD ALELPQTPEA KGGRTAGGGT GTANAFKEPV MLLDSPAGIA
ASTQQSVHLA ADQLLNLVSG QTTTVASGQS LIVAALNLIS LFAQNGGMKA IAAKGDIISR
RMPV
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