Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_4159 |
Symbol | |
ID | 6181469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 1201273 |
End bp | 1202337 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641683928 |
Product | squalene/phytoene synthase |
Protein accession | YP_001810839 |
Protein GI | 172063188 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.283896 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.280623 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGACTC ATACCGATCC CGCCTATCTG CTCGGCGACC TGCTGAAGAA CGTTTCCCGC TCCTTTTACC TGACGCTGCG CGTGCTGCCC GACGGCATGC GCGAGCCGGT CGGCCTGGCC TACCTGCTTG CGCGCGCGGC CGACACGATC GCCGACACGG CGCTCGTCGC GCCCGAGCGT CGCGCGGCGC TGCTGACCGA CCTGCGCGAC GAGATCGAGC GGCTCGGCGA CGGCGCGGCG CTGTCGCGCG CGCTCGAGGA CGTCACGCGG ATGCAGACGG ATTCGCACGA ACATATGCTG CTCGCGTCGA TGAAGCCGAT GCTTGCGTTG CTGCGCGCGC AGCCGGACGC GGACCGCGCA TCGATCCGCA AGGTCGTCGC GACGCTGACG TCGGGGATGG AATTTGACCT GCGCACATTC CCCGACGAGC AGTCGGGGCA GGTCGCGTCG CTGCCGAGCC GTGACGAACT CGATCGCTAC ACGTATCTGG TCGCCGGCTG CGTCGGTGAA TTCTGGACCG ACATGACCGG CGCGCACACG CGGGCCGCGC GCGGCTGGGA CTTCGCGGAC ATGCGCGAGA AGGGCATCCG TTTCGGCAAG GCGCTGCAGA TGACCAACAT CCTGCGCGAC TGCGCGAAGG ACCTGCGGAT CGGCCGCTGC TACCTGCCGG ACGACGTGCT GGCCGAGCAT CGCATCGGCG TCGCCGATCT GATGTCGCCC GATGCGTCGG CCCGCGCGCG CGGCGTGCTG GTCGAGCTGT TGCGCACGAC GCTCGCGCAG TATCGCGACG CGTGCTTCTA TACGCAGGCG ATTCCGCGCC GCTTCGTGCG TCTGCGGCTC GCGTGCCTGT GGCCGATCAT GATCGGCCTC GAAACGCTCG CACTGCTGGC CGGCCACGAC GCGTGGCTCG ATCCGGCGCG GCCGGCGAAG GTGCCGCGCA AGCGGATCTA CCGGATCATG GCGTCGTCGC TCGCGCTCGT CGGTTCCAAC GCGGCGATCC GTGCGCGCAT CAACGCGCTG GTCGACGCGG TGAACGCGCG GATCGCGGCA CCCGCGTCGC ATTGA
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Protein sequence | MTTHTDPAYL LGDLLKNVSR SFYLTLRVLP DGMREPVGLA YLLARAADTI ADTALVAPER RAALLTDLRD EIERLGDGAA LSRALEDVTR MQTDSHEHML LASMKPMLAL LRAQPDADRA SIRKVVATLT SGMEFDLRTF PDEQSGQVAS LPSRDELDRY TYLVAGCVGE FWTDMTGAHT RAARGWDFAD MREKGIRFGK ALQMTNILRD CAKDLRIGRC YLPDDVLAEH RIGVADLMSP DASARARGVL VELLRTTLAQ YRDACFYTQA IPRRFVRLRL ACLWPIMIGL ETLALLAGHD AWLDPARPAK VPRKRIYRIM ASSLALVGSN AAIRARINAL VDAVNARIAA PASH
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