| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4149 |
|---|
| Symbol | |
|---|
| ID | 6180942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 1189680 |
|---|
| End bp | 1190480 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641683918 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001810829 |
|---|
| Protein GI | 172063178 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0621662 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAGCG CCGCCGTTCT CGAACCCTCC GTTGTCTCGG CGCCTCGCGG CGCGCGCATC
GACATCCGCC GCGTGAGCCA TGCATTCGAC GGCCCCGGCG GCCCGCTGCC GGTGCTCGAC
GACGTCACGC TGTCGGTCGC GGCCGGTGAA TTCGTCGCGC TGCTCGGCCC GAGCGGCTGC
GGGAAATCGA CGCTGCTGCG GCTCGTCGCG GGCCTGGACG CCGCGCGGCA AGGCACGATC
GCGCAGGACG GCGCGCCGAT CGAACGGCCC GATCCGTCGC GCATCGTCGT GTTCCAGGAT
CCGACGCTCT ACCCGTGGCG GCGGGTGCGC GCGAACGTCG CGCTCGGTCT CGAAGCGCGC
GGCGTGGCGC GCACCGCGCA GCATCGCGTC GACGATGCGC TCGCGCGCGT CGGGCTGCAG
GAATTCTCGA ACGTGTTTCC GCATCAGCTG TCGGGCGGGA TGGCGCAGCG CGTCGCGCTC
GCCCGCGCGC TCGTCAACGA TCCGCGCCTC CTGATCCTCG ACGAGCCGCT CGGCAAGCTC
GACTCGCTGA CGCGCCTGAC GATGCAGGCA GAGCTGACCG CGCTGTGGCA ACGCGACGGA
TTCTCCGCGC TGCTCGTCAC GCATGATGTC GAGGAAGCGC TGTTTCTCGC GCAGCGCGTG
ATCGTGTTCG GGCCGCGTCC CGCACGCATC GTCGCGGAAC TGCGCGTCGA CCTGCCCTAT
CCGCGCCATC GCGGCGACCC GCGTCTCGCC GAGCTGCGTC ATGAAGCGCT GCGGCATCTC
GGCCTCGATG CGAGCTGGTA G
|
|---|
| Protein sequence | MVSAAVLEPS VVSAPRGARI DIRRVSHAFD GPGGPLPVLD DVTLSVAAGE FVALLGPSGC
GKSTLLRLVA GLDAARQGTI AQDGAPIERP DPSRIVVFQD PTLYPWRRVR ANVALGLEAR
GVARTAQHRV DDALARVGLQ EFSNVFPHQL SGGMAQRVAL ARALVNDPRL LILDEPLGKL
DSLTRLTMQA ELTALWQRDG FSALLVTHDV EEALFLAQRV IVFGPRPARI VAELRVDLPY
PRHRGDPRLA ELRHEALRHL GLDASW
|
|---|
| |