| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4045 |
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| Symbol | |
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| ID | 6180590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 1063986 |
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| End bp | 1066007 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641683815 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001810726 |
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| Protein GI | 172063075 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.158094 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.57128 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGATT CCCGTCCCTC CCCGCGCACG ACATTCAAGC CACAGGTCGT CCTGCCCGCG
CTCGCGGTCA TCGGCGCGCT GCTCGTTGTA TGCGCGCTGC TCCCGAGCGA AGCCGGCGCG
CTGTTCTCCG CCGGCCAGCA ATGGGTCGTC ATGCGCTTCG ACTGGTTCTA CGTGCTGGCC
GTCACCACGT TCCTCGTGTT TCTCGTGCTG ATCGCCGCAA GCGATTTCGG CAACATCCGG
CTCGGCCCCG ACGACGCCGA ACCCGAGTTC AGCTTCGTGT CGTGGACGGC CATGCTGTTC
GCGGCCGGCA TGGGCATCGG CCTCATGTAT TTCGGCGTCG GCGAGCCGAT GCAGCACTTC
CTGAAGCCGC CGACCGTCGA CCCCGGCACG CCCGCCGCCG CGCGCGAGGC GATGCTGATG
ACCTTCTTCC ACTGGGGCTT TCATGCGTGG GCGATCTACG GGCTGATGGG GCTCGTGCTC
GCGTACTTCG GCTTTCGCTA CAACCTGCCG CTGACGCTGC GCTCGGGGCT GTATCCGGTG
CTGCGCGAGC GCATCAACGG CTGGATCGGC CACACGGTCG ACGCGTTCGC GCTGGTCGGC
ACGGTCGCCG GCATCGCGAC CACGCTCGGC TATGGCGTGA TGCAGATGAG CGCGGGCCTG
CATACGGTCG TCGGCTGGGA CACCGGCAGC AATCTATTTC GCATCGGGCT CGTCGCGATC
GTGGTGCTGC TCGCGGGCCT GTCGGCCGCG AGCGGCCTCG ACAAGGGCGT GCGCCGGCTG
TCCGAGCTGA ACCTGCTGCT CGCGTTCCTG CTGCTCGCGT TCGTGGTCGT CGCGGGCCCG
ACGGCATTCC TGTTCCGCGC GCTAGGCGAC AACATCGGCC AGTACCTGTC GAATCTCGTC
GACCTGTCGT TTCGCACCTA TGCGTATGCG TCGCCGCGCG AGGAAGGCTG GTTCGGCGGC
TGGACGATCC TCTACTGGGC GTGGTGGATC TCGTGGTCGC CGTTCGTCGG CATGTTCATC
GCGCGCATCT CGCGCGGCCG CACGATCCGC CAGTTCGTGA TCGGCGTGCT GCTCGTGCCG
ACCGCGTTCA ACCTCGTATG GATGACCGTG TTCGGCAACA GCGCGATCTG GCTCGATACG
CACGGCGCGG CCGGCGCGCT CGCGCAGACG GCCACCAACG TCGATGCGCT GCTGTTCCGC
TTCTTCGATT TCCTGCCGTT GTCGCAATGG CTGTCGATCG CCGCGATCGT GCTGATCGCG
GTGTTCTTCG TCACGTCCGC CGATTCCGGC GCGTTCGTGA TCGACCAGAT CGCGACGCGA
GGCAACGCGC ACTCGCCCGT CTGGCAACGG CTGTTCTGGG CCGCGCTGCT CGGCGTGACG
GCCGCGGTGC TGCTCGTCGC GGGCGGGCTC GGCGCACTGC AGGCGATGAC GTTGATCGCC
GCACTGCCGG TCGCCATCAT CATGCTCGCG CTCTGCTACG GGCTGTGGCG CGGGCTCGCG
GCCGACCGCG CGCACTATTC GCAGGACGTC GCGCCCGCGA CGAGCTTCTG GACCGGCCAG
CACTGGCGCC ACCGCCTGAC GCACATCCTG CGGCAGACGA CCGAGGCCGA GGCACGCCAG
TTCGTCGCCG AGACGGTCGA GCCCGCGTTG CGCAAGGTAG CCGACGAACT GCGTACGGGC
GGCGTCGATG CGCACGTGCA GCACGACAGC GACGACGCCG TGCGGCTCAC CGTGCCGACC
GCCGAACACC GCGATTTCGT GTACGGCGTG CGCGTGACGG CGAAATCCAC GGCTGCGTTC
CTGGTGCGCG AAGCGGCCGA GCCGGAAGCG GCGCGTGCGC ACGTGTACGG GATCGTCACG
TTCTTCGAGG ACGGGCGGCT CGGCTACGAC CTCGAGTACC TGCGCGGCGA CGAAGTGATC
GCCGACGTGC TGCGCCAGTA CGAACGCTAT GTGTCGCTCG CGGCCGACAA GCGCACGCAT
CTGCTGAGCC GCGCGCCGGG GCACGCGACG GAGGCCGAAT GA
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| Protein sequence | MPDSRPSPRT TFKPQVVLPA LAVIGALLVV CALLPSEAGA LFSAGQQWVV MRFDWFYVLA
VTTFLVFLVL IAASDFGNIR LGPDDAEPEF SFVSWTAMLF AAGMGIGLMY FGVGEPMQHF
LKPPTVDPGT PAAAREAMLM TFFHWGFHAW AIYGLMGLVL AYFGFRYNLP LTLRSGLYPV
LRERINGWIG HTVDAFALVG TVAGIATTLG YGVMQMSAGL HTVVGWDTGS NLFRIGLVAI
VVLLAGLSAA SGLDKGVRRL SELNLLLAFL LLAFVVVAGP TAFLFRALGD NIGQYLSNLV
DLSFRTYAYA SPREEGWFGG WTILYWAWWI SWSPFVGMFI ARISRGRTIR QFVIGVLLVP
TAFNLVWMTV FGNSAIWLDT HGAAGALAQT ATNVDALLFR FFDFLPLSQW LSIAAIVLIA
VFFVTSADSG AFVIDQIATR GNAHSPVWQR LFWAALLGVT AAVLLVAGGL GALQAMTLIA
ALPVAIIMLA LCYGLWRGLA ADRAHYSQDV APATSFWTGQ HWRHRLTHIL RQTTEAEARQ
FVAETVEPAL RKVADELRTG GVDAHVQHDS DDAVRLTVPT AEHRDFVYGV RVTAKSTAAF
LVREAAEPEA ARAHVYGIVT FFEDGRLGYD LEYLRGDEVI ADVLRQYERY VSLAADKRTH
LLSRAPGHAT EAE
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