| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4015 |
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| Symbol | |
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| ID | 6180804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 1031372 |
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| End bp | 1032568 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641683785 |
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| Product | phosphonopyruvate decarboxylase |
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| Protein accession | YP_001810696 |
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| Protein GI | 172063045 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]
[COG4032] Predicted thiamine-pyrophosphate-binding protein |
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| TIGRFAM ID | [TIGR03297] phosphonopyruvate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.764027 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGAAG CGGCACAGTT CGTCGAGGCC GCGCGCGAGC GCGGTTTCGA CTGGTACGCG
GGCGTGCCCT GCTCGTACCT GACGCCGTTC ATCAATTACG TGCTGCAGGA CCCGACGCTG
CACTACCTGT CGGCTGCGAA CGAAGGCGAC GCGGTCGCGC TGATCGCGGG CGCCACGCTC
GGCGGCAAGC GCGGGATCGC GATGATGCAG AACTCCGGGC TCGGCAATGC GGTGAGCCCG
CTCACGTCGC TGACCTGGAC GTTCCGGCTG CCGCAGCTGC TGATCGTCAC GTGGCGCGGC
CAGCCGGGCG TGTCCGACGA GCCGCAGCAC GCGCTGATGG GGCCCATCAC GCCGGCTATG
CTCGACACGA TGGAGATCCC GTGGGAGACG TTCCCGACCG ACCCCGAACA GGTCGGCCCG
GCGCTCGACC GCGCGATCGC CCACATGGAC GCAACCGGCC GCCCGTACGC GCTCGTGATG
CAGAAAGGCA GCGTCGCGCC GTATGAACTG AAGGCGAACC CCGCGGCGAC GCCGCGCGCG
CATGTCGCCG CACAGTCGGC CGCACGTGCT GAATCCCCCG CATCGTGGCC GACCCGCCAC
GACGCGCTGC AACGCGTGAT CGCGCACACG CCGGTCGATT CGACCGTCGT GCTCGCGTCG
ACCGGCTTCT GCGGCCGCGA ACTCTATGCG ATCGACGACC GTCCGAACCA GTTGTACATG
GTCGGCTCGA TGGGTTGCGT GACGCCGCTC GCGCTGGGTC TCGCGCTCGC GCGCCCCGAC
CTGCGCGTGG TGGCCGTCGA CGGCGACGGC GCCGCGCTGA TGCGCATGGG CGTGTTCGCG
ACGCTCGGCA CCTATGGTCC GTCCAACCTC ACGCACGTAC TGCTCGACAA CGGCGCGCAC
GAATCGACCG GCGGCCAGGC GACCGTGTCG CGCCATGTGT CGTTCGCGGG CGTCGCGGCC
GCGTGCGGCT ATGCGTCCGC CGTCGAAGGC GACACGCTCG ACGTGCTCGA TGCGATGCTC
GGTGCGGAGG GCGACGGGGT CCGGCCATCC GGTACGCAGT TCGTGCGCGT TGCGATCCGC
ACGGGCGTGC CCGACGGCCT GCCCCGCCCG ACCGTCACGC CGGTCGAGGT CAAGACCCGC
CTGATGCGGC ATATCGGCGC CGCACAGGCC GAAGCCCACG CCGAAGGAGC TCATTGA
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| Protein sequence | MIEAAQFVEA ARERGFDWYA GVPCSYLTPF INYVLQDPTL HYLSAANEGD AVALIAGATL
GGKRGIAMMQ NSGLGNAVSP LTSLTWTFRL PQLLIVTWRG QPGVSDEPQH ALMGPITPAM
LDTMEIPWET FPTDPEQVGP ALDRAIAHMD ATGRPYALVM QKGSVAPYEL KANPAATPRA
HVAAQSAARA ESPASWPTRH DALQRVIAHT PVDSTVVLAS TGFCGRELYA IDDRPNQLYM
VGSMGCVTPL ALGLALARPD LRVVAVDGDG AALMRMGVFA TLGTYGPSNL THVLLDNGAH
ESTGGQATVS RHVSFAGVAA ACGYASAVEG DTLDVLDAML GAEGDGVRPS GTQFVRVAIR
TGVPDGLPRP TVTPVEVKTR LMRHIGAAQA EAHAEGAH
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