Gene BamMC406_3959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3959 
Symbol 
ID6180952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand+ 
Start bp961734 
End bp962423 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content68% 
IMG OID641683729 
Producthypothetical protein 
Protein accessionYP_001810640 
Protein GI172062989 
COG category[S] Function unknown 
COG ID[COG3819] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.413455 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGTGC TGATTGGGGT GCCGATCGTC GTGATCGGTT TCGCGCTGCG CTTCAACGCG 
CTGCTGGTGG TCACGATCGC GGGCATCGCG ACGGGGCTGG CGGGCGGGAT GAATCTTGTC 
GACATCGTCA GCGCGTTCGG CAAGGCGTTC ACCGACAACC GCTACATGGG GCTGATCTGG 
CTGACGCTGC CGGTGATCGC GCTGCTCGAG CGCAATGGCC TGAAGGAGCA GGCGAAGCGG 
ATGATCTCGC GCGTGCAGGC GGCGACCACC GGCCGCGTGC TGATGCTGTA TTTCGTGCTG 
CGCCAGGCGA CGGCCGCGCT CGGCCTCACG TCGCTCGGCG GGCACGCGCA GATGGTGCGG 
CCGCTGATCG CGCCGATGGC CGAGGCCGCC GCCGTCAGCC AGCACGGTGA GCTGCCCGAG 
TCGGTGCGCC AGCAGATTCG CGCGCACGCA TCGGCCGCCG ACAATGTCGC CGTGTTCTTC 
GGCGAGGACA TCTTCATCGC GATCCAGTCG ATCCTGCTGA TCAAGGGCTT TCTCGAACAG 
AACGGCATCG CGATCGAGCC GCTGCAACTG TCGGTCTGGG CGATCCCGAC CGCGATCGCG 
GCACTGCTGA TCCACTGCAC GCGGCTCGCG TTGCTTGACC GCCGGCTGTC GCGCGGCTTC 
GGCGCGTTCG GGCGGGAGGG CGCGCGATGA
 
Protein sequence
MLVLIGVPIV VIGFALRFNA LLVVTIAGIA TGLAGGMNLV DIVSAFGKAF TDNRYMGLIW 
LTLPVIALLE RNGLKEQAKR MISRVQAATT GRVLMLYFVL RQATAALGLT SLGGHAQMVR 
PLIAPMAEAA AVSQHGELPE SVRQQIRAHA SAADNVAVFF GEDIFIAIQS ILLIKGFLEQ 
NGIAIEPLQL SVWAIPTAIA ALLIHCTRLA LLDRRLSRGF GAFGREGAR