| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3955 |
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| Symbol | |
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| ID | 6180608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 956434 |
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| End bp | 958683 |
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| Gene Length | 2250 bp |
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| Protein Length | 749 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641683725 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_001810636 |
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| Protein GI | 172062985 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.298684 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0854397 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAATACCG AACCGCAAAG TTCTCGATAC AGCCTCGGCC TGGCGGCGGA AGTCCTCGCG
TCCGAGCAAA GCGTGCTGAG GCTGATCACG CGCAACACAC CGCTGCCGGA ACTGCTCGTC
GAAGTCTGCC GGCGCGCCGA GGCGCTGCTC GGCGAAGGCG CGTCGTGCAC GATCCTGCTG
CTCGACGCGG ACGGCGTGCA TGTGCACGTC GGCGCCGCGC CGTCGCTGCC CGCGCAGTAC
AGCGCCGCGA TCGAAGGCGC GTCGATCGGG CCCGCCGCGG GCTCGTGCGG CACCGCGATG
TACGAGCGCC GGATGATCGC CGTCGAAGAC ATCGAAACCG ATCCGTTGTG GGCCGACTAT
CGGGCGTTCG CGCTGCCGCT CGGCCTGCGC GCCTGCTGGT CGGTGCCGTT CCTGGACGAA
ACGGGCACCG TGCTCGGGGC GTTCGCCGTC TATCACCGCG CGCCGCGGCG GCCCAGCGAC
ACGGAAACCG ACCTGCTGCG CGATATCGGC AACAGCGTCG GCCTCGCGGT GCACCAGGAC
TCGATCGCTC GTCAGCTCGT GCACAGCGAG GAGCAACACC GTCTGGTCGT CAACAGCCTG
AACGAAGGGA TTCTCATGTT GTCGCCCGAC GGCGTGGTGA TCGCGAGCAA TCCGAGCGCG
AACCGGATGA TGCGCGTGAA GGGCGAGCTC GTCGGGCGCC GGCTGTCGAG CGTGATCCTG
TACAAGCTGC GCGAGGACGG CACGCCTATC GCGCCCGACG AATGGCCGAG CCGGCTCGCG
TTCACCACGG CCACGCCGCT GCTCGACTAC TCGGTCGGCT TCGGGCTCGC GGACGGCGAC
ATCATCTGGG TGCGCGGCAA CGCGGTGCCG ATCGTGAAGC CGGGCGAGAC GCGGCCCGAG
TCGGTGCTCG TGTCGTTTCA CGACATCGGC CCCGTGCGCG AAGCGCAGCA GCAACTGCGC
TACCTGGCGA CGCGCGACGC GCTCACGGGC CTCTACAACC GGCGCTGGCT CTCCGAGCGG
ATGCGCGAGC TGTTCGGCAC GCACGATGCG GCGGCCGGGC CCGCGCGCGT CGCGATCCTG
TTCATCGATC TCGTCGGGTT CAAGAAGGTC AACGACACGG CCGGCCACGA CGCCGGCGAC
GCGCTGCTGC GCAGCGTCGC GGCGCGCCTC GCGGCCTGCG CGGGCGGGCG CCACGCGCTC
ACGCGCGTCG GCGGCGACGA GTTCGTGATC CTCGTCGACC AATGCGACGA TCCCGACGAA
CTGTCCGCGC TCGCGCGCGA GGTGATCGAC ACGATCGCGA AGCCGTTCGC GATCGCGAAC
AACGAGTACT GGCTCGGCGT GTCGATTGGG ATCAGCGTCG CGCCGCGCGA CGGCGACGAT
GCGGTCACGC TGATGCGCAA CGCCGATTCC GCGATGTACG ACGCGAAGCA GCGCGGCCGC
AATCATTTCA CGTTCTTCAC CGCGCAACTG AATCTGCGCC TGCAGCGCCG CTTCGCGATC
GAGCAGTCGC TGCGCCGCGC GATTTCGTCG GACGCGCTGC GGCTCGCCTA CCAGCCGGTC
GTCGACGCGC GCAGCGGCCG CACCGTCGGC GCCGAAGCGC TGCTGCGCTG GACCAGCCCC
GAGCTCGGGC CGATGTCGCC GACGGAATTC ATCCCGGTCG CGGAAGATAC GGGGCTGATC
GTGGCGATCG GCCAGTGGGT GCTCGAAACG GCCTGCCGGC AGGCCGCCGA ATGGCGCCGC
ACGATCGCGC CCGACCTGAT GCTGGCGGTC AACCTGTCGC CGCGGCAGTT CCACGAGGGC
CTCGTCGAGT CGGTCGGCCG CTGCCTCGCG CAGACGCAGC TCGACCCGGG CGCGCTCGAG
CTCGAGATTA CCGAAGGACT GCTGATGAAC GACACGGACA CCGTGCTGCC GATGCTGGAG
GCGCTCACGG ACATGAACGT GCGGATCTCG GTCGACGATT TCGGCACCGG CTATTCGTCG
CTCGCGTACC TGAAGCGGTT TCCGCTGCAT AACCTGAAGG TCGACCGCTC ATTCGTGTCG
GGCGTGCCCG ATCATCGCGA CTCGGTCGCG ATCACGCAGG CCGTCGTCGC GATGGCGCAT
TCGCTCGGGA TGAAGGTCAC CGCGGAAGGG GTCGAGACCG AGGCGCAGTC GTGGTTCCTG
CAGCAGATCG GCTGCGACAT GCAGCAAGGC TACCTGTTCG GCCGGCCGCT CGATCCGGCC
GACTACGCGC GCCGGCTCGT CACCGTGTAG
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| Protein sequence | MNTEPQSSRY SLGLAAEVLA SEQSVLRLIT RNTPLPELLV EVCRRAEALL GEGASCTILL
LDADGVHVHV GAAPSLPAQY SAAIEGASIG PAAGSCGTAM YERRMIAVED IETDPLWADY
RAFALPLGLR ACWSVPFLDE TGTVLGAFAV YHRAPRRPSD TETDLLRDIG NSVGLAVHQD
SIARQLVHSE EQHRLVVNSL NEGILMLSPD GVVIASNPSA NRMMRVKGEL VGRRLSSVIL
YKLREDGTPI APDEWPSRLA FTTATPLLDY SVGFGLADGD IIWVRGNAVP IVKPGETRPE
SVLVSFHDIG PVREAQQQLR YLATRDALTG LYNRRWLSER MRELFGTHDA AAGPARVAIL
FIDLVGFKKV NDTAGHDAGD ALLRSVAARL AACAGGRHAL TRVGGDEFVI LVDQCDDPDE
LSALAREVID TIAKPFAIAN NEYWLGVSIG ISVAPRDGDD AVTLMRNADS AMYDAKQRGR
NHFTFFTAQL NLRLQRRFAI EQSLRRAISS DALRLAYQPV VDARSGRTVG AEALLRWTSP
ELGPMSPTEF IPVAEDTGLI VAIGQWVLET ACRQAAEWRR TIAPDLMLAV NLSPRQFHEG
LVESVGRCLA QTQLDPGALE LEITEGLLMN DTDTVLPMLE ALTDMNVRIS VDDFGTGYSS
LAYLKRFPLH NLKVDRSFVS GVPDHRDSVA ITQAVVAMAH SLGMKVTAEG VETEAQSWFL
QQIGCDMQQG YLFGRPLDPA DYARRLVTV
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