| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3934 |
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| Symbol | |
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| ID | 6179141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 935639 |
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| End bp | 936496 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641683705 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001810616 |
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| Protein GI | 172062965 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.49834 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.136531 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACGAT CCGTCATCCG CGCGCTGGCG TTCGCGGCCG TGCTGCCCGT GCTGGCCGGC
GGTTGCGCGC CGGGCATCCA GACGAGACCG GCGCTGTCGC AAAAGAGCGA CGACCCGCAA
GCCGAATTGC GCATTGCCGA CAGCGCGCTC GCCGGCGGCA ACGTCGAGCT CGCGTCGACG
CTGTACGGAA AGGTGCTCGC CCGGCATCCC GATTCGCTCG CGGCGCAGCT GGGGCTCGGC
GACGTCAACT ACCGGGCCGG CGATCTGGAG CGCGCACGGA TTCTCTATGA GCAGGCACGG
CAACAGGCGC CGGCGGATCT CGGGCCGCAA CTCGGGCTCG CGCGCGTCGC GTTGCGGCAG
CGCCGGCTCG ACGAGGCCGC GCAGCGCTAC CGCGACTTGC TGGCCGCGCA GCCGAACCTG
CCGCTCGCCG CGCAAGGGCT CGGCACGGTG CTGGACCTGC AAGGCCGCCA TGCCGACGCG
CAAGCCGTGT ATCGCGACGC GCTCAACGCG CATCCGGACG CGCAGGGGCT GCGCATCGAC
CTCGGGCTGT CGCTCGTGCT GAGCAACCGG CCGCGCGACG GCGTGAACGT GCTGCTCGAC
GTGGCCGGCT TGCCCGACGC GCCGTGGCAG GCGCGCCAGA ACCTCGCGTT CGCGTACGGG
GTGCTCGGCA ACACGGATTC GGCGAAGAAG CTGTTGTCCG CCGACCTGCC TGCGTCGGCG
GTGGCCGACA ACCTGCGCTT CTACCAGGCG GTGCGCGCGC AGCTCGCGGC GCGCCCGACG
GCCGCCGCCG CGCGGCCGTT GACGGGCGCC GCGCTCGAGC GGAGCGTCGT GCCTCCCGCT
GCGGGGACCG CAAAATGA
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| Protein sequence | MTRSVIRALA FAAVLPVLAG GCAPGIQTRP ALSQKSDDPQ AELRIADSAL AGGNVELAST
LYGKVLARHP DSLAAQLGLG DVNYRAGDLE RARILYEQAR QQAPADLGPQ LGLARVALRQ
RRLDEAAQRY RDLLAAQPNL PLAAQGLGTV LDLQGRHADA QAVYRDALNA HPDAQGLRID
LGLSLVLSNR PRDGVNVLLD VAGLPDAPWQ ARQNLAFAYG VLGNTDSAKK LLSADLPASA
VADNLRFYQA VRAQLAARPT AAAARPLTGA ALERSVVPPA AGTAK
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