| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3933 |
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| Symbol | |
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| ID | 6179140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 934698 |
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| End bp | 935642 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641683704 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001810615 |
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| Protein GI | 172062964 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0787436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.204466 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGT CGATGCTGGC CGCCCGCGGC CTTGAACTGC TGCTGTTGGT CGCGTGCGTC
GCCGCGGCGC TCGCGACGCC CGGCGGCGGC ACGCGCCGGC GCATCGCCGC GCGCGTGCAG
CAGGCGGCCG GACAGCGCTC GCTGTCGCTG GCGGCGGGGC GGCTGCAGCC GGGCGAGGTG
CGTCAGGACC TGACGCGGCG GCTCGCGCAG CTCGGCGAGC GGCTGCCGGT GCTCGACCCG
ATGCAGCGTG TGAAGCTCGG GCTGCAGCTC ACGCGCGCCG GCTTTCGCGA GCGCCGCGCG
GTGTCGGCGA TGATCGGCAT CAAGCTGAGC TGCGGCGTGC TGTTCGCGGG CTTCGCGATC
GTGTTCAGCC CGTACATTCC GCGGCTCGGC GAATTCTTCG TGATCCGTGC GGTGGCGATG
GTCGGCGCGT TCGTGATCGG CGTGATCGTG CCCGAGTACG TGCTCGGCGC GATGATCCGG
CGGCGCCGGC GCATCATCGC CGCGTGCTTT CCGGATGCGC TCGACCTGCT CGTGATCTGC
ACGATGGCCG GGAACAGTCT CGCATCGGGC GTGCGACGCG TCGCACGCGA ACTCGAACGC
ATCTGTCCGC CGCTTGCCGA CGAGCTGACC GTGTGCGCGG ACGAGCTGAC ACTGAGCGGC
AATGTCTCGG AGGCGCTCGC GCATTTCGCG CTGCGCGTCA ATTTTTCGTC GGCGCGCTCG
CTCGCCACGA CGCTCACGCA ATCACAGCGA TTCGGCACGC CGATCACGCA GGCGCTGCGC
ACGCTGTCGC GCAGCGAGCG CACCGAGCAG GTCGTCGCGC TCGAGGAAAA GGCCGCGAAG
CTCGCGCCGA AGATCACCGT GCCGATGATG CTGTTCATCC TGCCGACGGT CGGCCTGATC
GCGGCGGGGC CGGCGGCGAT CCGCCTGATC GAGGTATTCA AATGA
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| Protein sequence | MTMSMLAARG LELLLLVACV AAALATPGGG TRRRIAARVQ QAAGQRSLSL AAGRLQPGEV
RQDLTRRLAQ LGERLPVLDP MQRVKLGLQL TRAGFRERRA VSAMIGIKLS CGVLFAGFAI
VFSPYIPRLG EFFVIRAVAM VGAFVIGVIV PEYVLGAMIR RRRRIIAACF PDALDLLVIC
TMAGNSLASG VRRVARELER ICPPLADELT VCADELTLSG NVSEALAHFA LRVNFSSARS
LATTLTQSQR FGTPITQALR TLSRSERTEQ VVALEEKAAK LAPKITVPMM LFILPTVGLI
AAGPAAIRLI EVFK
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