| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3928 |
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| Symbol | |
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| ID | 6181129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 929287 |
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| End bp | 930669 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641683699 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001810610 |
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| Protein GI | 172062959 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.13282 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.228642 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGCGCA TGGTTCGTTG GATCGCTGTC TGGTGTCTGG CCTGCATCGT CGCGCCGGGC
GTCGCGCTCG CGCAGCGCGC GCACGCGGCC GACGCCGGCG CGCCGTTGTC GATCGCGACC
GGCAAGGGCG AGATGCTGTC GCTGTCCGAA CCCGCGACAG CGATGTTCGT CGCGGATCCG
AGCATCGCCG ACATCCAGGT GCCGTCGCCG CGCACCGTAT TCGTGTTCGG CAAGAAGGCC
GGCACCACCA CGCTGATCGC GCTCGGCGCG AACCATCGGC CGATCCTGCG CCGCACGGTG
ATCGTGCAGG TCGACACCGC GTCGCTGCAG ACGGTGCTCG ACAGCCGCTT TCCGCAATTG
AAGCTGGCGG TGTCGGGCGC GCCGGGCTCG CTGATGGTGT CGGGCAAGGT GCCGAGCGCG
GCCGACGCGG ACGCCGTGAT GCAGTCGCTC ACGCCCTACC TGAACGACAA GGAAAGGATC
GTCAACCGGC TCACGCTGTC GCGCCCGATC CAGGTGAACC TGCGCGTGCG CGTGACCGAG
GTGAGCCGCA ACGTCACGCA GCAGCTCGGC ATCAACTGGA GCTCGCTCGG CGCGGCCGGC
AATTTCATCG GCGGGCTGTT CAACGGGCGC ACGTTGATGG ATCCGACGAC CAAGCTGTTC
AACCTGTCGC CGACCGGCGC GTATTCGGTG CTCGGCGGCT TCCACGCGGG ACGCTGGTCG
ATCGACGTCG TGCTCGACGC GCTCGACCAG GAAGGCCTGA TCACGATGCT CGCGGAGCCG
AACCTCACCG CGATGTCCGG CCAGACCGCG AGCTTCCTCG CGGGTGGCGA GATTCCGATT
CCGGTCGCGC AGGCCGGCAA CACGACCGGC GCGATCACGG TCGAGTTCAA GCCGTTCGGC
GTATCGCTCG ATTTCACGCC GACCGTGCTC GCCGACAACC GGATCAGCCT GAAGGTGCGT
CCGGAAGTGA GCGAGGTCGA CGCGAACAAC AGCGTGACGA CCGGCGGCGT GACGGTGCCG
GGGCTCACCG TGCGGCGCGT CGAGACGACG GTCGAGCTGT CGAGCGGGCA GAGCTTCGCG
ATCGGCGGGC TGCTGCAGAG CCAGACGGCC AACACCGTGT CGCAGATTCC TGGGCTCGGG
CGGCTGCCGA TCATCGGCCG GCTGTTTTCA TCGAAGAACT TCCAGGACAA CAAGACCGAG
GTCGTCGTGA TCGTGACGCC GTACATCGTG CAGCCGACCG GCCCCGGCCA GCTCGAACAG
GCGCTCGACA CCGTCGCGCG GCCGAGCAGC GATCTCGAGT TCGCGGTGCA GCGCAATCTC
GGGCTCGACC TGATGTCGGG CGAAACGCCG CGCCCCGTCG GCGCCGCGGG CTTCGTGTAT
TGA
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| Protein sequence | MVRMVRWIAV WCLACIVAPG VALAQRAHAA DAGAPLSIAT GKGEMLSLSE PATAMFVADP
SIADIQVPSP RTVFVFGKKA GTTTLIALGA NHRPILRRTV IVQVDTASLQ TVLDSRFPQL
KLAVSGAPGS LMVSGKVPSA ADADAVMQSL TPYLNDKERI VNRLTLSRPI QVNLRVRVTE
VSRNVTQQLG INWSSLGAAG NFIGGLFNGR TLMDPTTKLF NLSPTGAYSV LGGFHAGRWS
IDVVLDALDQ EGLITMLAEP NLTAMSGQTA SFLAGGEIPI PVAQAGNTTG AITVEFKPFG
VSLDFTPTVL ADNRISLKVR PEVSEVDANN SVTTGGVTVP GLTVRRVETT VELSSGQSFA
IGGLLQSQTA NTVSQIPGLG RLPIIGRLFS SKNFQDNKTE VVVIVTPYIV QPTGPGQLEQ
ALDTVARPSS DLEFAVQRNL GLDLMSGETP RPVGAAGFVY
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