| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3926 |
|---|
| Symbol | |
|---|
| ID | 6180534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 927704 |
|---|
| End bp | 928183 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641683697 |
|---|
| Product | peptidase A24A prepilin type IV |
|---|
| Protein accession | YP_001810608 |
|---|
| Protein GI | 172062957 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4960] Flp pilus assembly protein, protease CpaA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.121154 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.368068 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTATC TCGTACAGCT GACGGCCACG CTCGTGCTGG TGTCGATCGC GATGCAGGAC
TTGCGCGAGC GGCGCGTGTC CAATCGCGCG GTGCTGGCGT TCGCGATGCT GTACCCGGTC
GCGGCGGCGC TCGGGCGCGA AGGGCTCGCG CCATTTGCCG GCCACGTCGC GACCGCCGCG
GCGATGCTGG TGGTGTTCGG CGCGCTGCGT CACGCGGGCT GGCTCGGCGG CGGCGACGTG
AAGCTGGCCG CGGCGGTATT CCTGTGGGCC GGCCCGCCGC TCGCGTTGCC GGTGCTGACG
ATCGTCGGCA CGAGCGGCGC CGCGTGCGGC CTCGCCATGC TCGCTGGCGT CGCACGGCAG
CGTCGCGTCG CGCCTGCGCA CCCGATGGCG ACGCGCGGCG TGCCGTACGG CGTCGCGCTT
GCATTCGGCG GCGCGCTGGC CGTCTGGGCG CCGTTTCCTC ACGCACTTTC GCTTACCTAG
|
|---|
| Protein sequence | MLYLVQLTAT LVLVSIAMQD LRERRVSNRA VLAFAMLYPV AAALGREGLA PFAGHVATAA
AMLVVFGALR HAGWLGGGDV KLAAAVFLWA GPPLALPVLT IVGTSGAACG LAMLAGVARQ
RRVAPAHPMA TRGVPYGVAL AFGGALAVWA PFPHALSLT
|
|---|
| |