| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3923 |
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| Symbol | |
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| ID | 6180554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 924035 |
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| End bp | 925621 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641683694 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001810605 |
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| Protein GI | 172062954 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00333304 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.449349 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCAT CGCTGCTGCT TGCCGGCGGC CTCACGCACG CGTTCGCCGC GCCGGCCGGC
AAGACGCTCG TGTACTGCAG CGAAGGCAGT CCGGCCGGCT TCGATCCGGG CCAGCACACG
ACCAGCACCG ATTTCGATGC GAGCACGTAC ACGATCTACA ACGGGCTCGT GCAGTTCAAG
CGCGGCACGC TCGATCTCGT CCCGTCGCTC GCGACGAGCT GGGACGTGTC ATCCGACCAG
CGCGTCTACA CGTTCCACCT GCGGCGCGGC GTGAAGTTCC AGACGACCGC GTGGTTCAAG
CCGACGCGTC CGTTCCAGGC CGACGACGTC GTGTTCACGT TCGGCCGGAT GCTCGACCCC
GACAGTCCGT TTCGCAAGGC TTACCCGGTC AGCTTTCCGT ACTTCAGCGA TCTCGGGTTC
GACCGCAACA TCGAGCGCAT CGAAAAGGTC GACGACGACA CGGTGCGCTT CGTGCTGAAG
TCGCCCGACG TCGTGTTCGT GCGCAATCTC GCGATGGCGT TCGCATCGAT CCTGTCGGCC
GAATATGCGT CGCAACTGGC GGCACGTCAC CGCGAGGCCG ACATCAACCA GCTTCCGGTC
GGCACCGGGC CGTTCCAGCT GCGTGCGTAC CAGAAGGACG CGGCGATCCG CTACGACGCG
AACCCCGACT ACTGGAAACC GGACGACGTG AAGCTCACGC ATCTCGTGTT CGCGATCACG
CCCGATCCGG CCGCGCGCCT GCAGAAGCTC ACGGCCGGCG AGTGCCAGGT GTCGGTGTTC
CCGCGGCCGG CCGATCTCGA GACGGTGCGG CGCGATCCGA AGCTGACGCT GTTTTCGGGG
ACCGGGTTCA ACGTCGGCTT CGTCGCGTAC AACACGCAGC ATCCGCCGCT CGATCGCGTC
GACGTGCGGC GCGCGCTCGA CATCGCGATC GACAAGACGG CGATCGTCAA GACGGTGTTC
AACGGCGACG CGACGATCGC GACGAACCCG ATGCCGCCGG CGCAATGGTC GTACAACCCG
CGGCTGAAGG ACGCGCCGCG CGATCCGGCG GCCGCGAAGG CGCTTCTCGC GCAGGCGGGA
TTTCCGAACG GCTTCGACCT GACGCTGTGG GCGATGCCGG TGCAGCGCCC GTACAACCCG
AACGCGCAGC TGATGGCGCA ACTGATCCAG CAGGACTGGG CGAAGATCGG CGTGCGCGCG
AAGATCGTCA GCTACGAATG GGGCGAATAC AACCGCCGCG CGAAACGCGA CGGGCAGCAC
GACGCGATCC TGTACGGCTG GTCGGGCGAC AACGGCGACC CCGACAACTG GCTCGGCACG
CTGCTCGGTT GCGATGCGGT GCACGGCAGC AATCTCGCGA AGTGGTGCAA CGCGGATTTC
GAGCGGCTCG TCAGTGCGGC GCGCACGAAC GCGGACGTCG CGAAACGCAC GTCGCTTTAC
GAACAGGCGC AGGTGGTGTT CAAGGATCAG GTGCCGTTCA CGCCGATCGC GACGTCGATC
GTGTCGCTGC CGATTTCGAA GCGCGTGCAC GGGGTGACGT TCTCGCCGCT CGGCGGGCAC
CGGTTCGATG GGGTGTGGCT GGATTGA
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| Protein sequence | MAASLLLAGG LTHAFAAPAG KTLVYCSEGS PAGFDPGQHT TSTDFDASTY TIYNGLVQFK
RGTLDLVPSL ATSWDVSSDQ RVYTFHLRRG VKFQTTAWFK PTRPFQADDV VFTFGRMLDP
DSPFRKAYPV SFPYFSDLGF DRNIERIEKV DDDTVRFVLK SPDVVFVRNL AMAFASILSA
EYASQLAARH READINQLPV GTGPFQLRAY QKDAAIRYDA NPDYWKPDDV KLTHLVFAIT
PDPAARLQKL TAGECQVSVF PRPADLETVR RDPKLTLFSG TGFNVGFVAY NTQHPPLDRV
DVRRALDIAI DKTAIVKTVF NGDATIATNP MPPAQWSYNP RLKDAPRDPA AAKALLAQAG
FPNGFDLTLW AMPVQRPYNP NAQLMAQLIQ QDWAKIGVRA KIVSYEWGEY NRRAKRDGQH
DAILYGWSGD NGDPDNWLGT LLGCDAVHGS NLAKWCNADF ERLVSAARTN ADVAKRTSLY
EQAQVVFKDQ VPFTPIATSI VSLPISKRVH GVTFSPLGGH RFDGVWLD
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