| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3921 |
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| Symbol | |
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| ID | 6180187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 921978 |
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| End bp | 922970 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641683692 |
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| Product | aliphatic sulfonate ABC transporter periplasmic ligand-binding protein |
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| Protein accession | YP_001810603 |
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| Protein GI | 172062952 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00214435 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.666529 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACA CACCGCACGC CGACCTTGAA ACGACCCCGG CCAACCCGCG CCGCCGCCAC
TGGCTGCACG GCGCGGCCGC CGGCCTGGCC GGGCTCGCGC TCGGCCCGCT CGCAGGCCTG
CCCGCACTGG CGCAGGGCAG CGACAAGCGG CTGCGCATCG GCTTCCAGAA ATACGGCAAT
TTCGTCGTGC TCAAGGCGCG CGGCACGCTC GAGAAACGGC TCGCGAGCCA GGGCGTGGCG
GTGCAGTGGC TCGAATTCCC GGCCGGCCCG CAATTGCTCG AGGGGCTGAA TGCCGGCGCG
ATCGACGTCG GCACGGTCGG CGAGACGCCG CCGATCTTCG CGCAGGCCGC GGGTGTGGAT
TTCGTCTATA TCGGCAACGA ACCGCCGGCG CCGCACGGCG AGGCCATCGT CGTGCTGCCC
GATTCACCGA TTCGCACCGT CGCGCAGCTG CGCGGCAAGA AGGTCGCGTT CAACAAGGGT
TCGAACGTCC ACTACCTGCT CGTGAAGGCG CTCGAACACG CGGGCCTCAC ATATGCCGAC
ATCCAGCCGG TCTACCTGAC GCCCGCCGAT GCGCGCGCCG CGTTCGTGCA GCACAGCGTC
GACGCGTGGG TGATCTGGGA TCCGTATCTG GCGGCGGCCG AACGGCAGCT CGGCGCGCGC
GTGGTCGCGA ACGGCGACGG GCTCGTGCGC AACACGCAGT ACTACCTCGC CGCGCGCAAG
TATGCGGCCG CGCAACCGCA GGTGCTGCGC ACGCTGCTCG ACGAAGTCGA CGCGGTCGAC
CGCTGGGGAC GCGACAATGT TCCGGAAGTC GCCGCGCAAC TGTCGCCGCT CGTCGGCCTC
GACGCGCCGA CGCTCGAAAT CGCGCTCAAG CGGGCCGGCT ACGGCGTGCA GCCCATCACC
GATGCGACGC TCGCGTATCA GCAGAAGATC GCCGACGCGT TCAGCACGCT GAAGCTGATT
CCCGGCAAGG TGACGGTCGC GAACGCGCGC TGA
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| Protein sequence | MNDTPHADLE TTPANPRRRH WLHGAAAGLA GLALGPLAGL PALAQGSDKR LRIGFQKYGN
FVVLKARGTL EKRLASQGVA VQWLEFPAGP QLLEGLNAGA IDVGTVGETP PIFAQAAGVD
FVYIGNEPPA PHGEAIVVLP DSPIRTVAQL RGKKVAFNKG SNVHYLLVKA LEHAGLTYAD
IQPVYLTPAD ARAAFVQHSV DAWVIWDPYL AAAERQLGAR VVANGDGLVR NTQYYLAARK
YAAAQPQVLR TLLDEVDAVD RWGRDNVPEV AAQLSPLVGL DAPTLEIALK RAGYGVQPIT
DATLAYQQKI ADAFSTLKLI PGKVTVANAR
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