| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3901 |
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| Symbol | |
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| ID | 6180360 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 903876 |
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| End bp | 906320 |
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| Gene Length | 2445 bp |
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| Protein Length | 814 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641683673 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001810584 |
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| Protein GI | 172062933 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTTTC AATCCAGGCT TCACCACGGA CAGGGGGAGG CACGGTCTGG GCCTCACGCC
GGGGCTTACA TGGAACCGCA CTGGCTGCCC AGGCGCGTGC GCTCCGGCAG ACACGGTGCG
ATGGCGCCTG CAAAGGCGAA ACCGTTGCCC TCGACCCACC ACTGGCACCG TCAAGGGTCC
TGCGTGAGCG TGCAGAGCGA TTCGGTCAAT CGTCGCATCC TCGTGATCAA CGACAACGTT
GCGGCGCACC AGAATTTCCG CAAGATCCTC GCTCGGCCAC TGGACGGCGA AACTGCGCTG
GCCGCAACCC AGGCGCCGTT GTTCGGCGAG GTTCCAGCCG GTCGCGCGGC GTTTCAGATC
GATTCCGCCT ATCAGGGCCG GGACGCGCTG GAGCGGGTCG TGCGTGCGCT GGAGGAGGAC
AAACCCTATG CGATGGCCTT TGTCGACACG CACATGCTGC ACGGTTGGGA CTGCCTTCAG
ACCATCGAGC GACTCTGGCA AGTGGATCCG AAGCTGCAGT TTGCCCTATG CAGCCCGCAT
TCCGATCCCC CTTGGGGCAC CCTGGCCAGG CGCCTGGGCG CAGACGACCG GCTGCTCATT
CTCAAGAAGC CATTGAACAA CATCGAGGTC CGTCAGACGG CCAGCGTGCT GACCACGAAG
TGGCAGATGA CGAAAGAGGC GGCCTTCAAG ACGGGCGACC TGGGAGAGCT CGTCGAGGAA
AGAATCAATG CGCTTGCCGA AGCCAACATC ATCGTCCAGA ACAGTCCGGT CATCCTTTAC
CGTCTGCGCG GCGTGCCGTC GTTTCCGCTC ATCTACATAT CGCATGACAT CGCCAGGTTC
GGCCACGACC GCGCTACCTT GCTCGCTTCG CCAGTCTGGG CCAACGAGCT TGTCGCGCAG
GACGACCAGG CCAGAGTCGA TGCGGCGCTG GCGCGAATAC TGGACAAGGA CACCGAAGGC
GTCTCGATCG AGTTCCGCTT GCGCACTGGC GACGGCGCTT ACCGTTGTGT CGAGAATCGC
TATGTTCCGG TCCGCGACAA GGATGGACGG CTAATCGAAG TCGAAGGGAT CATCATCGAC
ATTGCCGAGC GCAAGGCGGC GGAGGAAAAG ATCGCGCGGC TCGCTCATAC CGACGCGCTC
ACGGGATTGG CGAATCGTGC CGGCTTCCTC GCGCGGGTGC GCCACGCTTT CGCCGCGGCC
CGACATGGCA CCATGCCGTT TGCGATCTTG TTTGTCGCTC TCGACCGCTT CAGGCCGGTC
AACGACAGGC TGGGTTATCC GGTCGGCGAC CTGTTGCTTC GGGAGGTGGC GGAGCGTCTC
GGGAATTGCG TTCAGGAAAG CGACCTGGTT GCACGGTTGG GCGGCGATGC GTTTGCCGTG
GTGCAGGGCG AGATGATCGA GCCGGCGGAC GCCGGGGCGC TGGCTGCGAA GCTCCAGGCG
GCGCTGGCGG CTCCCTATCT GCTTGATGGT AACGATGTGC GGATTTCGGT GAGCATCGGC
ATCCGGGCGT ACGTCCAGGG CGACAGTGGA GCAGACGCCA TGCTGATGCA GGCCGATTTG
GCGCTCCACC GCGCGAAGCA TCACGGCGGC AACCGGTACC GCTTTCATTC CGACGAACTG
GACCACGAAG TACGCGAACG TGTCGCACTC GCTGACGACT TGAAAGGAGC GATGGATCGC
GGCGAGCTGG AACTCCAGTA CCAACCCGAG GTCGAGTTGT CCTCCGGAAA CATTCTCGGA
ATGGAAGGGC TGGTTCGCTG GCATCACCCG ACGCGAGGCC TCATTGCCCC CGGTGTGTTC
ATTCCGATCG CCGAGAGGGA AGGCTCCATG GCAGCGCTTG GTCGCTGGGT GCTGGATCAG
GCGTGCCGGC AAATGAGAAC GTGGCGCGAC GAGGGGGTGG CCCCGCTGAT GATCGCGATC
AATCTGTCTC TGTTCGAGCT CCGGAGTGCT CAAACGTTCG TGCGCGATGT CGCTGAAGCG
GCCGCGAAGT GGCGCCTTGC CCCCTCCGAT CTGGAATTCG ACGTGACCGA GGCGACACTG
GCCAGGCTGT CGTGGGCACA AAGCGACATA CTCCCGCAGC TGCATGCGCT CGGCGCGAAG
CTTGCCATCG ATGATTTCGG TAGCAATTAC GCGTCATTTG AGTATGTCCA GGCTTATCGC
GTGAACCATC TCAAGATCGC GCGATCCCTT ATCCACCGGT CAACCAGCGA TCCAGAGAGT
GCGGCGACGA TACATGCCAT CGTCACCTTT GCGCACAGTA TCGGGATCGG AGTCATTGCC
CAAGGCGTGG AGACCGAGCA ACAGCGCGCG CTGCTGGCTG CGACGAATCG GGCGACAAGC
GCGCAAGGCT TCCGTTTCAG CGAAGCGGTG GGGGCCGCTC GCGCCAGCGA ACTCCTGCGC
CAAGGCCACA TCGCGCCATG CGCGGCGCCT TGTCCGGAAG GGTAG
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| Protein sequence | MRFQSRLHHG QGEARSGPHA GAYMEPHWLP RRVRSGRHGA MAPAKAKPLP STHHWHRQGS
CVSVQSDSVN RRILVINDNV AAHQNFRKIL ARPLDGETAL AATQAPLFGE VPAGRAAFQI
DSAYQGRDAL ERVVRALEED KPYAMAFVDT HMLHGWDCLQ TIERLWQVDP KLQFALCSPH
SDPPWGTLAR RLGADDRLLI LKKPLNNIEV RQTASVLTTK WQMTKEAAFK TGDLGELVEE
RINALAEANI IVQNSPVILY RLRGVPSFPL IYISHDIARF GHDRATLLAS PVWANELVAQ
DDQARVDAAL ARILDKDTEG VSIEFRLRTG DGAYRCVENR YVPVRDKDGR LIEVEGIIID
IAERKAAEEK IARLAHTDAL TGLANRAGFL ARVRHAFAAA RHGTMPFAIL FVALDRFRPV
NDRLGYPVGD LLLREVAERL GNCVQESDLV ARLGGDAFAV VQGEMIEPAD AGALAAKLQA
ALAAPYLLDG NDVRISVSIG IRAYVQGDSG ADAMLMQADL ALHRAKHHGG NRYRFHSDEL
DHEVRERVAL ADDLKGAMDR GELELQYQPE VELSSGNILG MEGLVRWHHP TRGLIAPGVF
IPIAEREGSM AALGRWVLDQ ACRQMRTWRD EGVAPLMIAI NLSLFELRSA QTFVRDVAEA
AAKWRLAPSD LEFDVTEATL ARLSWAQSDI LPQLHALGAK LAIDDFGSNY ASFEYVQAYR
VNHLKIARSL IHRSTSDPES AATIHAIVTF AHSIGIGVIA QGVETEQQRA LLAATNRATS
AQGFRFSEAV GAARASELLR QGHIAPCAAP CPEG
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