Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3876 |
Symbol | |
ID | 6180536 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 871626 |
End bp | 872783 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641683647 |
Product | porin |
Protein accession | YP_001810559 |
Protein GI | 172062908 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.311637 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAC TCGCTCTCTC GACCCTCTCG CTCGCCCTGC TGGGCGCCGC TGGCGCTGCT CACGCTCAGT CGAGCGTGAC GCTGTACGGC GTGATCGACA CGTCGATCGC ATGGGTTCAC GGCAACAACG GTCAAGCCAA CAACTCGTGG CAAATGCTGT CGGGCAACCT GCAAGGCAGC CGTTGGGGCC TGAAAGGTGC TGAAGACCTC GGCGGCGGCC TGAAGGCGAT CTTCCAGTTG GAAAACGGTT TTGATCCGGG CACGGGCCAC CTGAACCAGG GCGGTCGCAT GTTCGGTCGC CAGGCATTCG TCGGCCTCCA GAGCGACCAG TACGGTACGC TGACGCTCGG CCGCCAGTAC GACCCGCTGG TCGACCTGGT CCAGGCAGTG ACGGCTGACA ACTACTTCGG CAGCGTGATG GCAACGCCGG GCGACGTCGA CAACAACGAC AACTCGCTGC GCGTCAGCAA CGCGATCAAG TACACGTCGC CGGTCTGGGC AGGCTTCCAG GTCGAAGGTA TGTACGCCCT CGGCGGCGTT GCAGGCAAGA CGGGTTCGGG CCAGACGTGG TCGGTCGCGG CTGCCTACAA CAACGGCCCG GTCGGCGTTG CAGCAGGCTA CTTCTACGCA GCCAACCCGT CGCCGACGAC CACTCCGGGT CGCCCGGGCT GGGGTTCGAC GACGTCCGAC GCGATCTTCG ACGGCCCGAT CAACCTTGGC TACCAGACGG CGAAGTCGAT CGCCATCGCA CAAGTCGCAG GTCAGTACGC ACTGGGCCCG GTGACGTTCG GCCTCGGCTA CAGCAATGCA CAGTACAAGC CGGACGCATT CTCGGGCTTC GGTTCGACCG AAAAGTACAA CACGGGCCGC GCGTTCGTGA CGTACCAGGT CACGCCGCCG CTGCTGCTGG GCCTCGGCTA CTCGTACACG AAGGCGAGCG GCGACACGAG CGCGAAGTAC CATCAAGTCG GTGTCGGCGC GGACTACTCG CTGTCGAAGC GCACGGACAT CTACCTGGTT GGCGCATACC AGCACGCGAG CGGTACGCAG CTCGTCGACG GCGTGCAGCA AAGCGCGCAA GCGTCGATCG CTTCGTACGG CTTCGCCGGC AAGAGCTCGG CCGAACTCGT CGCACTCGGC ATTCGTCACA AGTTCTAA
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Protein sequence | MKKLALSTLS LALLGAAGAA HAQSSVTLYG VIDTSIAWVH GNNGQANNSW QMLSGNLQGS RWGLKGAEDL GGGLKAIFQL ENGFDPGTGH LNQGGRMFGR QAFVGLQSDQ YGTLTLGRQY DPLVDLVQAV TADNYFGSVM ATPGDVDNND NSLRVSNAIK YTSPVWAGFQ VEGMYALGGV AGKTGSGQTW SVAAAYNNGP VGVAAGYFYA ANPSPTTTPG RPGWGSTTSD AIFDGPINLG YQTAKSIAIA QVAGQYALGP VTFGLGYSNA QYKPDAFSGF GSTEKYNTGR AFVTYQVTPP LLLGLGYSYT KASGDTSAKY HQVGVGADYS LSKRTDIYLV GAYQHASGTQ LVDGVQQSAQ ASIASYGFAG KSSAELVALG IRHKF
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