| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3829 |
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| Symbol | sdhA |
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| ID | 6179424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 820568 |
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| End bp | 822343 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641683600 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001810512 |
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| Protein GI | 172062861 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.726427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.325233 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGCAA TCAAAACTTC CCTGCCGCGC CGCAAGTTCG ACGTGGTGAT CGTCGGCGCG
GGCGGCTCGG GCTTGCGCGC AGCGCTGCAA CTGTCGCGCG CGGGCCTGTC GGTCGGCGTG
CTGTCGAAGG TGTTCCCGAC CCGTTCGCAC ACGGTGGCCG CACAGGGCGG CATCGGCGCG
TCGCTCGGCA ACATGAGCGA AGACAACTGG CACTTCCACT TCTACGACAC GATCAAGGGT
TCCGACTGGC TCGGCGACCA GGACGCGATC GAGTTCATGT GCCGCGAAGC ACCGAACGTC
GTGTACGAAC TGGAACACTT CGGCATGCCG TTCGACCGTA ACGCGGACGG CACGATCTAC
CAGCGTCCGT TCGGCGGCCA TACGGCGAAC TACGGCGAGA AGCCGGTCCA GCGCGCTTGC
GCGGCCGCCG ACCGTACCGG TCACGCGCTG CTGCACACGC TGTACCAGCA GAACGTCGAA
GCGAAGACGC AGTTCTTCGT CGAATGGATG GCGCTCGACC TGATCCGCGA TGCCGACGGC
GACGTGCTCG GCGTGACGGC CCTCGAGATG GAGACGGGCG ACGTCTACAT CATGGAAGGC
AAGACGACGC TGTTCGCGAC GGGCGGCGCA GGCCGGATCT TCGCGGCGTC GACCAACGCG
TTCATCAACA CCGGCGACGG CCTCGGCATG GCCGCGCGTT CGGGCATCGC GTTGCAGGAC
ATGGAGTTCT GGCAGTTCCA CCCGACCGGC GTGGCCGGCG CGGGCGTGCT GATCACCGAA
GGCGTGCGCG GCGAAGGCGG TATCCTGCGC AACGCGAACG GCGAGCGCTT CATGGAACGC
TACGCGCCGA CGCTGAAGGA TCTGGCGCCG CGTGACTTCG TGTCGCGTTC GATGGACCAG
GAAATCAAGG AAGGCCGCGG CGTCGGTCCG AACAAGGACC ACGTGCTGCT CGACCTGTCG
CACATCGGCG CCGAGACGAT CATGAAGCGT CTGCCGTCGA TCCGCGAAAT CGCGCTGAAG
TTCGCGAACG TCGACGCGAT CAAGGAACCG ATCCCGGTCG TCCCGACGAT CCACTACCAG
ATGGGCGGCA TCCCGACCAA CATCCACGGT CAGGTCGTCG GCACGTCGCG CGATCACAAG
GAACCGGTCA ACGGCTTCTA CGCAGTGGGC GAATGCTCGT GCGTGTCCGT GCACGGCGCG
AACCGCCTCG GCACGAACTC GCTGCTGGAC CTCGTGGTGT TCGGCCGGGC GGCCGGCAAC
CACATCGTCG AGCACGTGAA GAACCAGAAG GAACACAAGC CGCTGCCGGC CGATGCAGGC
GAATTCTCGC TGGCGCGTCT GAACAAGCTC GACAAGTCGT CGTCGGGCGA ATACACGCAG
GACGTCGCGA ACGACATCCG CGCGACGATG CAGAAGCATG CAGGCGTGTT CCGCACGTCG
GCGCTGCTGA AGGAAGGCGT CGAGCAGATG GCCGGCCTCG CGGCACGCGT GGAAAGCATC
CACCTGAAGG ACAAGTCGAA AGTGTTCAAC ACCGCGCGCG TCGAAGCGCT CGAGCTGGAG
AACCTGATCG AAGTGGCCCG CGCGACGATG GTGTCGGCGG AAGCGCGCAA GGAAAGCCGT
GGCGCACACG CGCACAGCGA CTACGAACAC CGCGACGACG ACAACTGGCT GCGCCACACG
CTGTGGTACA GCGAAGGTGA TCGCCTCGAC TACAAGCCGG TTCAAATGAA GCCGCTGACG
GTCGAATCCG TGCCGCCGAA GCCGCGCACG TTCTAA
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| Protein sequence | MAAIKTSLPR RKFDVVIVGA GGSGLRAALQ LSRAGLSVGV LSKVFPTRSH TVAAQGGIGA
SLGNMSEDNW HFHFYDTIKG SDWLGDQDAI EFMCREAPNV VYELEHFGMP FDRNADGTIY
QRPFGGHTAN YGEKPVQRAC AAADRTGHAL LHTLYQQNVE AKTQFFVEWM ALDLIRDADG
DVLGVTALEM ETGDVYIMEG KTTLFATGGA GRIFAASTNA FINTGDGLGM AARSGIALQD
MEFWQFHPTG VAGAGVLITE GVRGEGGILR NANGERFMER YAPTLKDLAP RDFVSRSMDQ
EIKEGRGVGP NKDHVLLDLS HIGAETIMKR LPSIREIALK FANVDAIKEP IPVVPTIHYQ
MGGIPTNIHG QVVGTSRDHK EPVNGFYAVG ECSCVSVHGA NRLGTNSLLD LVVFGRAAGN
HIVEHVKNQK EHKPLPADAG EFSLARLNKL DKSSSGEYTQ DVANDIRATM QKHAGVFRTS
ALLKEGVEQM AGLAARVESI HLKDKSKVFN TARVEALELE NLIEVARATM VSAEARKESR
GAHAHSDYEH RDDDNWLRHT LWYSEGDRLD YKPVQMKPLT VESVPPKPRT F
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