| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3822 |
|---|
| Symbol | prpD |
|---|
| ID | 6181022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 814108 |
|---|
| End bp | 815559 |
|---|
| Gene Length | 1452 bp |
|---|
| Protein Length | 483 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641683593 |
|---|
| Product | 2-methylcitrate dehydratase |
|---|
| Protein accession | YP_001810505 |
|---|
| Protein GI | 172062854 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
|---|
| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.238522 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCC CGGTCTCCAA CGTCCGCCCT GCTCCGGATA CGGTACTCGT CGATATCGTC
GACTACGTGC TGGACACCGG CATCGACAGC GCGCTCGCGC TGGAGACGGC GCGTCATTGC
CTGATCGACA CGCTCGGATG CGGACTCGAG GCGCTGTCCT ATCCCGCCTG CACCAAGCTG
CTCGGCCCCG TCGTGCCCGG CACGATCGTG CCGAACGGCG CGAAGGTGCC CGGCACGTCC
TTCCAGCTCG ATCCCGTCCA GGCCGCGTTC GACATCGGCG CGATGATCCG CTGGCTGGAC
TTCAACGACA CCTGGCTCGC CGCCGAATGG GGTCATCCGT CCGACAATCT GGGCGGGATC
CTGGCGACGG CCGACTGGCT GTCCCGCACG GCCGTCGCGG CCGGCCGGAA GCCTCTGCTC
ATGCGCGACG TGCTGGTCGC GATGATCCAG GCCCACGAGA TCCAGGGTTG CCTCGCCCTC
GAGAATTCTT TCAACGCGGT CGGGCTCGAC CACGTGCTGC TCGTGAAGGT CGCGTCGACG
GCCGTCGTCG GCCGCCTGCT CGGGCTCACG CGCGACGAGC TGATCAACGC GGTGTCCAAC
GCATTCGTCG ACGGCCACGC GCTGCGCACC TACCGCCACG CGCCGAACAC CGGTTCGCGC
AAGTCATGGG CGGCCGGCGA CGCGACGTCC CGCGCGGTGC GCCTCGCGCT GATCGCGAGA
ACGGGTGAAA TGGGCTACCC GTCGGCGCTC ACCGCAAAGA CCTGGGGCTT CTACGACGTG
CTGTTCGACG GGCAGCCGTT CCGCTTCCAG CGCCCGTACG GCACGTACGT GATGGAGAAC
GTGCTGTTCA AGATCGCGTT CCCGGCCGAA TTCCACGCGC AGACGGCCGC CGAGGCCGCG
CTGCAGTTGC ACGCCCGGCT CGCCGCGGCG GGCCGCACGA CCGACGACAT CAGCCGGATC
ACGATCCGCA CGCACGCGGC CGCGCTGCGC ATCATCGACA AGCAGGGCCC GCTCGCCAAT
CCGGCCGATC GCGATCACTG CATCCAGTAC ATGGTCGCCG TGCCGCTGCT GTTCGGCCGG
CTGACCGCGG CCGATTACGA AGACGCGCTC GCCGCCGATC CGCGCATCGA CGCGCTGCGC
GCGAAAACCG TGTGCGTCGA GGATCCGCAG TTCACGAAGG ATTACCATGA CCCGGCCAAG
CGATCGATCG CGAATGCGCT GACGATCGAA TTCGCGGACG GGTCGAAGCT TGCCGAAGTG
GCGATCGAAT ACCCGCTCGG CCACCGGCGC CGCCGCACGG AAGGCATCCC GCTGCTGGTC
GAGAAGTTCA GGACCAACCT CGCCCGCCGC TTTCCGGCCA GGCAGCAACA AGCGATTCTC
GACGTGTCGC TGGACCAGGC AAAGCTCGAA GCAATGCCGG TCGATGAATA CGTCGACTTG
TATGTGATAT AG
|
|---|
| Protein sequence | MSAPVSNVRP APDTVLVDIV DYVLDTGIDS ALALETARHC LIDTLGCGLE ALSYPACTKL
LGPVVPGTIV PNGAKVPGTS FQLDPVQAAF DIGAMIRWLD FNDTWLAAEW GHPSDNLGGI
LATADWLSRT AVAAGRKPLL MRDVLVAMIQ AHEIQGCLAL ENSFNAVGLD HVLLVKVAST
AVVGRLLGLT RDELINAVSN AFVDGHALRT YRHAPNTGSR KSWAAGDATS RAVRLALIAR
TGEMGYPSAL TAKTWGFYDV LFDGQPFRFQ RPYGTYVMEN VLFKIAFPAE FHAQTAAEAA
LQLHARLAAA GRTTDDISRI TIRTHAAALR IIDKQGPLAN PADRDHCIQY MVAVPLLFGR
LTAADYEDAL AADPRIDALR AKTVCVEDPQ FTKDYHDPAK RSIANALTIE FADGSKLAEV
AIEYPLGHRR RRTEGIPLLV EKFRTNLARR FPARQQQAIL DVSLDQAKLE AMPVDEYVDL
YVI
|
|---|
| |