Gene BamMC406_3817 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3817 
Symbol 
ID6180130 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp807578 
End bp809317 
Gene Length1740 bp 
Protein Length579 aa 
Translation table11 
GC content68% 
IMG OID641683588 
Productpeptidase S53 propeptide 
Protein accessionYP_001810500 
Protein GI172062849 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG4934] Predicted protease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0534043 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.750552 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGGA ACACCTGGTT TGCGCTGCCC CTTCCGTCGC CCCGCCACCT CGCGTGCGCG 
GTACCGCTCG TGTTCGCCGC CGCCGCGGCC CATGCGGCGA CGGATTGGGT CGATACCCAT
ACGAAAGCCT TTCTGACCGG CCCGCAGTTG ATGGCGCGCA GCGCGGCGCC GTCGCTCGAG
CTCGCGGCCG GCGAGACGAC GGACATCGTC GTCAGCCTGA AGCTGCGCAA CGCCGCGCAG
CTCAAGCAAC TCGCGCACGA CGTGAACCGG CCCGGCAACG CGCATTACCG CCAGTACCTC
ACGCACGAAC AGTTCCTCGC CGGCTACGCG CCGACCGAAG CCCAGGTCAA GTCGGTCGTC
GACTATCTGC GCAAGAGCGG CTTCGTGAAC ATCGAAGTCG CGCCGAACCG GCTGCTGGTG
TCCGCGCACG GCACGACCGG CACGGTGAAG ACCGCGTTCA ACACGTCACT CGTTCATTTC
GAGTACGCGG GCCGCTCCGG CTTCGCGAAC GCGTCGACCG CGCAGGTGCC GCATGCGCTC
GGCGACGTCG TCGGCTCGGT GCTCGGGCTG CAGAACGTCG CACGCGCACG GCCGCTGCTG
CGCATCGGCA ACGTCGCGAA GCCGCAGGCG CTCGCGGCCG GCACGGCCAC CGGCCACTAT
CCGAAGGAAT TCCCGGGCCT CTACAACGCG ACCGGCGTGC CGACCGCGGC CGGCGTGACC
GTCGGCATCA TCACGATCGG CGGCGTGTCG CAAACGCTGC AGGACCTCAG GCAGTTCACG
TCGAGCAACG GTTACGGCAC GGTCACGACC CAGACCGTCA AGACCAACGG CACCGGCACG
AGCGGCAGCT ACAGCGACGA CCAGGACGGC CAGGGCGAAT GGGATCTCGA CAGCCAGTCG
ATCGTCGGCT CGGCCGGCGG CCAGGTCGGC AAGCTCGTGT TCTACATGGC GGACCTGAAC
GCCGCCGGCA ACACCGGGCT CACGCAGGCA TTCAACCGCG CGGTGTCGGA CAACACCGCG
AAGGTGATCA ACGTGTCGCT CGGGTGGTGC GAGACCGATG CGAACGCGGA CGGCACGCTC
GACGCCGAAG AGCAGATCTT CACGACGGCC GCCGCGCAAG GACAGACGTT CTCGGTGTCG
TCGGGCGACG AAGGCGTGTA CGAGTGCAAC AACCGCGGCT ATCCGGACGG CGGGAACTAC
ACGGTGTCGT GGCCGGCCGC GTCGCCGCAC GTGCTCGCGA TCGGCGGCAC GACGCTCTAT
ACGACGTCGG CGGGCGCGTT CTCGAACGAA ACGGTGTGGA ACGAGGGGCT CGACGGCAAC
GGCAAGCTAT GGGCCACGGG CGGCGGCGTC AGCTCGATCC TGCCGGCGCC GTCGTGGCAG
TCGGGCAGCA ACCGTCAGTT GCCCGATGTA TCGTTCGACG CCGCGCAAGG CACGGGCGCG
TACATCTACA ACTACGGCCA GTTGCAGCAG ATCGGCGGCA CGAGCCTTTC CGCGCCGATC
TTCACCGGCT TCTGGGCGCG TCTGCTCGCG GCAAACGGCA CGGGCCTGGG CTTCCCGGCC
GGCAATTTCT ATGCGGACAT TCCGTCGAAC CCGTCGCTCG TGCGCTATGA CGTCGTCTCG
GGCAACAACG GCTATCAAGG GTATGGCTAC AGCGCAGGCA GCGGCCGGGA TCTGACGACC
GGCTTCGGCA GCCTGAACAT CGCGAACCTC AACAAGCTGA TCCAGACGGG CGGCTTCTGA
 
Protein sequence
MKRNTWFALP LPSPRHLACA VPLVFAAAAA HAATDWVDTH TKAFLTGPQL MARSAAPSLE 
LAAGETTDIV VSLKLRNAAQ LKQLAHDVNR PGNAHYRQYL THEQFLAGYA PTEAQVKSVV
DYLRKSGFVN IEVAPNRLLV SAHGTTGTVK TAFNTSLVHF EYAGRSGFAN ASTAQVPHAL
GDVVGSVLGL QNVARARPLL RIGNVAKPQA LAAGTATGHY PKEFPGLYNA TGVPTAAGVT
VGIITIGGVS QTLQDLRQFT SSNGYGTVTT QTVKTNGTGT SGSYSDDQDG QGEWDLDSQS
IVGSAGGQVG KLVFYMADLN AAGNTGLTQA FNRAVSDNTA KVINVSLGWC ETDANADGTL
DAEEQIFTTA AAQGQTFSVS SGDEGVYECN NRGYPDGGNY TVSWPAASPH VLAIGGTTLY
TTSAGAFSNE TVWNEGLDGN GKLWATGGGV SSILPAPSWQ SGSNRQLPDV SFDAAQGTGA
YIYNYGQLQQ IGGTSLSAPI FTGFWARLLA ANGTGLGFPA GNFYADIPSN PSLVRYDVVS
GNNGYQGYGY SAGSGRDLTT GFGSLNIANL NKLIQTGGF