| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3793 |
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| Symbol | |
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| ID | 6180651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 778209 |
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| End bp | 779696 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641683564 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001810476 |
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| Protein GI | 172062825 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.351966 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCCT TCTCCCTGCC CCGCCGCCCC GCGCTCACGC TGTGCGCAGC CGCTTGCCTG
CTCGCCGGCT GTACCGTCGG CCCCGACTAT CGCGGCGCAC CCGCGGCACC CGACGCGCCG
ACCTTCGTGC GTGCGCCGGC CACCGGCGTC GACTCCAACA CGCCCGCGCC GAGTGCGTGG
TGGCATGCGC TCGGCGATCG CCAGCTCGAC GACCTCATCG CCGCCGCGCT GGCGCACAAC
CCCGATCTGC AAGCCGCGCA GGCCCGGTTG CGCGCGTCGC GCGCGCAGCT GTCGCAACGG
CGCGCCGCCC AGTTGCCGAA ATCGTCGGCC ACCGTCGCCG CGATCCGCGC GCGCGAGCCG
GACGTCAGCG CGCTCGGCTC GCTGCTGCCG CCCGGCAACT CGAACCAGTC GGACGGTTCA
TCGCCGTCGC TGGGCGGCTC GGGCCCGTTG CAGCTCTATT CGGCCAGCTT CGACGCGACC
TGGGAAATCG ATCTGTTCGG CGGCACGCGC CGCGCGGTCG AAGCGGCGTC CGCGCAGGCG
GAAGCCGTCG ACGCCGACCT CGCCGACACG CAGGTGTCGA TCGCCGCCGA AGTGGCGACC
GCGTACGTCG ACCTGCGCGA CCAGCAGCAA CGGCTCGCGC TGTCGCAGCG CACCGCCGAA
CTGCAACAAC AGATGCTCGA GCTCACGCAG CAGCGCCGCG CGCGCGGCGT CGCGGCCGAT
GTGGACATCG AACGCCTGAC AACGCAGGTC GAAACCACGC GCGCGTCGGT GATCCCGCTC
GATGCGCAGG TGACGGAGTC GCTCGACCGG CTCGCGATCC TGACCGGCCG CGCGCCCGGT
GCGCTCGATG CCGCGCTGTC GGCATCGGGC GCGCCGCTGC CGACGCTACC CGGCAGCGTG
CCGGTCGGCG ATCCGGCCGC GCTGCTCAAG CAGCGCCCCG ACATCCGCGC GGCCGAGCGC
AGGCTCGCGT CGAGCAATGC GCAGATCGGC GAGCACATCG CCGACTATTT CCCGAAGGTG
ACGCTGCTCG GCGATCTCGG CTTCAGCGCG ACGGACCCCG GCCACCTGTT CCGCAAGCAG
AACTTCACAT GGGTCGGCGC GCCGTATCTG CAATGGAACA TTCTCGACTT CGGCCGCACG
CGCGGCGCAA TACGGGCGGC CGAAGCGTCG CGCGACGAAG CGGAGGCCAA TTACCGGAAA
GCGGTGCTCG GCGCATTGCA GGACGCGAAC ACGGCGCTGC AGCGCTACGG ACACCAGCGC
GAACATGTGG TCGCGCTCAC CAAGGTGCAG ACGTCGGCCA CGCATTCGGC CACGTTGATG
GACCAGCGCT ATCGCGCGGG CGTCGCGTCG ATCATCGATC TGCTCGATAC GCAGCGCGAG
GCGCTCGCCG CGCAGCAGAA CGTGATCGCT GGAAAGGCCG AACTCGTCAA GGATTACGTG
TCGCTGCAGA AGAGCCTCGG GCTCGGGTGG CAGACGAACG CGGGGTGA
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| Protein sequence | MKPFSLPRRP ALTLCAAACL LAGCTVGPDY RGAPAAPDAP TFVRAPATGV DSNTPAPSAW
WHALGDRQLD DLIAAALAHN PDLQAAQARL RASRAQLSQR RAAQLPKSSA TVAAIRAREP
DVSALGSLLP PGNSNQSDGS SPSLGGSGPL QLYSASFDAT WEIDLFGGTR RAVEAASAQA
EAVDADLADT QVSIAAEVAT AYVDLRDQQQ RLALSQRTAE LQQQMLELTQ QRRARGVAAD
VDIERLTTQV ETTRASVIPL DAQVTESLDR LAILTGRAPG ALDAALSASG APLPTLPGSV
PVGDPAALLK QRPDIRAAER RLASSNAQIG EHIADYFPKV TLLGDLGFSA TDPGHLFRKQ
NFTWVGAPYL QWNILDFGRT RGAIRAAEAS RDEAEANYRK AVLGALQDAN TALQRYGHQR
EHVVALTKVQ TSATHSATLM DQRYRAGVAS IIDLLDTQRE ALAAQQNVIA GKAELVKDYV
SLQKSLGLGW QTNAG
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