| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3783 |
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| Symbol | |
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| ID | 6179377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 756205 |
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| End bp | 758622 |
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| Gene Length | 2418 bp |
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| Protein Length | 805 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641683553 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001810466 |
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| Protein GI | 172062815 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.058561 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAGA CGACAGGCGG AAAGAAAGCA ACGGGCAAGG GCTCGACGGA GCCGACCACG
AAGGTCACTG CGGCCAAGTC TGCTTCTTCC ACCAGGACAA CGTCTTCGGC CACGTCAGCC
CCTGCGGGAA AGAAAACCGC GGCCGGCACT GCTCAGGCTG CGCCGGCGTC GGCAGCCAGA
ACACGGGCTG CCGCCAGACC CGACTCCGGG CCGGCCAAGC CGGCGGCGAA GCGGGCAAGT
GCGAAAAGCG CAAGGGACAC GACTGCCGCC GCGGACGAAA CGGCAGTACG TACTACTCAT
GCACCCACGG TTCAACCGGC TGTCGTCCAG CAGCCGCGAG TCGATATAGC CGGTACGGCG
AACTCCATGA CCAAAAAGCT GAACGAAGTA TCCGTCGATG ACGACGCAAA TCAGAGCGAC
GAGCAGCCCG CACCCGCGGC TGCTCCGGGC AAATCCAAGG TGCGCGATCG TCGCGCCAAG
GAAAAGGCGC TGCTGAAGGA AGCGTTCGCG ACGAGCACGC CCGGCACGGC CGAGGAGCTC
GAAGAGCGCC GCGTGAAGCT GCGCGCGCTG ATCAAGCTCG GCAAGGAGCG CGGCTTCCTC
ACGTATGCCG AAATCAACGA CCACCTGCCG GACAACTTCA CCGAGACAGA AGCCCTCGAA
GGCATCATCG GCACGTTCAA CGACATGGGC GTGGCCGTAT ACGAGCAGGC ACCGGACGCG
GAAACGCTGC TCCTGAACGA CAACGCGCCG GCCGCGTCGT CGGACGATGA AGTCGAGGAA
GAAGCGGAAG TCGCGCTGTC GACCGTCGAT TCGGAATTCG GTCGCACGAC CGATCCGGTC
CGGATGTACA TGCGCGAGAT GGGCACGGTC GAGCTGCTCA CGCGCGAAGG CGAAATCGAG
ATCGCGAAGC GGATCGAGGA CGGCCTGCGC CACATGGTGA TGGCAATTTC CGCGTGCCCG
ACGACGATCG CCGACATCCT CGCGATGGCC GAGCGCGTCG CGAACGAAGA GATCCGCGTC
GACGAACTCG TCGACGGCCT GCTCGATCCG AATGCTTCGG ACTCCGCCGA TACGGACGGT
TTCTCCGCGA AGGAAGCCGA AGCGATCGAG AACGAGGACG AGGAAGCCGA AGAGGAAGAG
GAAGAAGAGG AAGAGGAGGA CGATGACGGC GCCGCGCAGG CGACCGCCAA CGCCGCCCAG
CTCGAAGCCC TCAAGCGTGC TTCGCTCGAC AAGTTCTCGC AGATCAGCGA GTGGTTCGAC
AAGATGCGCC GCGCGTTCGA GAAGGAGGGC TACAAGTCGA AGTCCTACCT GAAGGCGCAG
GAAACGATCC AGACCGAACT GATGACGATC CGCTTCACCG CGCGTACCGT CGAGCGTCTG
TGCGACACGT TGCGTGCGCA AGTGGACGAA GTGCGTCAGG TCGAACGTCA GATCCTGCAC
ATCGTCGTCG ACAAGTGCGG CATGCCGCGT TCGGAATTCA TCGCGCGCTT CCCGGGCAGC
GAGACGGACC TCGACTGGGC CGAGAAGATC GCGGCCGAGG GGCATTCGTA CAGCGCGGTG
CTGTCGCGTA ACATCCCGGC GATCCGCGAA CAGCAGCAGC GTCTGCTCGA CCTGCAGGCG
CGCGTCGTGC TGCCGCTGAA GGACCTGAAG GAAACCAACC GCCAGATGGC GGCCGGCGAA
CTGAAGGCGC GTCAGGCGAA GCGTGAAATG ACCGAGGCGA ACCTGCGTCT CGTGATCTCG
ATCGCGAAGA AGTACACGAA CCGCGGCCTG CAGTTCCTCG ACCTGATCCA GGAAGGCAAC
ATCGGCCTGA TGAAGGCGGT GGACAAGTTC GAATACCGTC GTGGCTACAA GTTCTCGACC
TATGCGACGT GGTGGATCCG TCAGGCCATC ACGCGTTCGA TCGCGGACCA GGCGCGCACG
ATCCGTATTC CGGTTCACAT GATCGAGACG ATCAACAAGA TGAACCGCAT CTCGCGGCAG
ATCCTGCAGG AAACCGGTCT CGAGCCGGAT CCGGCAACGC TCGCCGAGAA GATGGAGATG
CCGGAAGACA AGATCCGCAA GATCATGAAG ATCGCGAAGG AGCCGATCTC GATGGAAACG
CCGATCGGTG ACGACGACGA TTCCCATCTC GGCGACTTCA TCGAGGACAA CAACACGGTC
GCGCCGGCGG ATGCCGCGCT GCATGCAAGC ATGCGCGACG TCGTGAAGGA CGTGCTCGAT
TCGCTGACGC CGCGTGAGGC GAAGGTGCTG CGGATGCGCT TCGGTATCGA GATGAGCACC
GATCACACGC TCGAGGAAGT CGGCAAGCAG TTCGACGTCA CGCGTGAGCG GATCCGTCAG
ATCGAGGCCA AGGCGCTGCG CAAGCTGCGT CACCCGAGCC GTTCCGACAA GCTGAAGTCG
TTCCTCGAAG GGAACTGA
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| Protein sequence | MAKTTGGKKA TGKGSTEPTT KVTAAKSASS TRTTSSATSA PAGKKTAAGT AQAAPASAAR
TRAAARPDSG PAKPAAKRAS AKSARDTTAA ADETAVRTTH APTVQPAVVQ QPRVDIAGTA
NSMTKKLNEV SVDDDANQSD EQPAPAAAPG KSKVRDRRAK EKALLKEAFA TSTPGTAEEL
EERRVKLRAL IKLGKERGFL TYAEINDHLP DNFTETEALE GIIGTFNDMG VAVYEQAPDA
ETLLLNDNAP AASSDDEVEE EAEVALSTVD SEFGRTTDPV RMYMREMGTV ELLTREGEIE
IAKRIEDGLR HMVMAISACP TTIADILAMA ERVANEEIRV DELVDGLLDP NASDSADTDG
FSAKEAEAIE NEDEEAEEEE EEEEEEDDDG AAQATANAAQ LEALKRASLD KFSQISEWFD
KMRRAFEKEG YKSKSYLKAQ ETIQTELMTI RFTARTVERL CDTLRAQVDE VRQVERQILH
IVVDKCGMPR SEFIARFPGS ETDLDWAEKI AAEGHSYSAV LSRNIPAIRE QQQRLLDLQA
RVVLPLKDLK ETNRQMAAGE LKARQAKREM TEANLRLVIS IAKKYTNRGL QFLDLIQEGN
IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKMNRISRQ
ILQETGLEPD PATLAEKMEM PEDKIRKIMK IAKEPISMET PIGDDDDSHL GDFIEDNNTV
APADAALHAS MRDVVKDVLD SLTPREAKVL RMRFGIEMST DHTLEEVGKQ FDVTRERIRQ
IEAKALRKLR HPSRSDKLKS FLEGN
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