| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3769 |
|---|
| Symbol | |
|---|
| ID | 6179964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 738546 |
|---|
| End bp | 741299 |
|---|
| Gene Length | 2754 bp |
|---|
| Protein Length | 917 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641683539 |
|---|
| Product | DNA polymerase I |
|---|
| Protein accession | YP_001810452 |
|---|
| Protein GI | 172062801 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
|---|
| TIGRFAM ID | [TIGR00593] DNA polymerase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.662383 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.00614094 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGAAG AACGAAATCT GGAAGGTAAG ACCCTGCTAT TGGTTGACGG TTCGAGCTAT
CTGTATCGGG CTTACCATGC GATGCCTGAT CTGCGTGGCC CTGGCGGGGA GCCGACCGGA
GCGCTCTACG GAATCATCAA CATGCTGCGC CGTATGCGCA AGGAAGTCAG TGCAGAGTAT
AGCGCTTGCG TGTTCGATGC AAAGGGCAAG ACGTTCCGCG ACGACCTTTA TGCCGACTAT
AAGGCAAACC GTCCGTCGAT GCCGCCCGAC CTCGCATTGC AGGTCGAGCC GATCCACGGC
GCGGTGCGCG CGCTCGGCTG GCCGCTACTG ATGGTCGAGG GCGTCGAGGC CGACGACGTG
ATCGGCACGC TCGCGCGCGA AGCCGAGCGG CACGGGATGA ACGTGATCGT GTCGACCGGC
GACAAGGATC TCGCGCAGCT CGTGTCCGAT CGCGTCACGC TCGTCAACAC GATGACCAAC
GAGACGCTCG ACCGCGACGG CGTGATCGCG AAGTTCGGCG TGCCGCCCGA GCGGATCATC
GACTACCTCG CGTTGATCGG CGACACCGTC GACAACGTGC CGGGCGTCGA GAAGTGCGGG
CCGAAGACGG CCGTGAAGTG GCTGTCGCAA TACGACAGCC TCGACGGCGT GATCGAACAC
GCGGGCGAGA TCAAGGGCGT GGTCGGCGAC AACCTGCGCC GCGCGCTCGA CTTCCTGCCG
CTCGGCCGCA CGCTCGTGAC CGTCGAGACG GCATGCGATC TCGCGCCGCA TCTCGAATCG
ATCGAGGCGT CGCTGAGGAC GGACGGCGAA GCACGCGACC TGCTGCGCGA CATCTTCGCG
CGCTACGGCT TCAAGACCTG GCTGCGCGAA GTCGAGAGCG CGCCCGCCGA AGGCGGCGGC
GCCGATGCAC CGGAGGGCGA CCCTGCGCCG GTGATCGCGG CGGACATCGT CCGCGAATAC
GACACGATCC AGACGTGGGC GCAATTCGAC GCGTGGTTCG CGAAGATCGA TGCGGCCGCG
CTGACCGCGT TCGACACCGA AACCACCGCG CTCGACCCGA TGATCGCCCG CCTCGTCGGC
CTGTCGTTCT CGATCGAGCC GGGCAAGGCC GCGTATCTTC CGGTCGCGCA TCGCGGCCCC
GACATGCCCG AGCAACTGCC GATCGACGAG GTGCTCGCGC GCCTGAAGCC GTGGCTCGAA
TCGGCCGATC GCAAGAAGGT CGGCCAGCAC CTGAAGTACG ACGCGCAGGT GCTCGCGAAC
TACGGCATCG AGCTGAACGG CATCGAGCAC GACACGCTGC TCGAATCGTA CGTGCTCGAA
TCCCACCGCA CGCACGACAT GGACAGCCTC GCGCTGCGTC ATCTGGGCGT CAAGACGATC
AAGTACGAGG ACGTGGCCGG CAAGGGCGCG AAGCAGATCG GTTTCGACGA AGTGGCGCTC
GAGCAGGCCG CCGCGTACGC GGCCGAAGAT GCGGACATCA CGTTGCAGCT TCACCAGGCG
CTGTATCCGC AGGTCGCGCG TGAAGCGGGC CTCGAGCGCG TGTATCGCGA CATCGAGATG
CCGGTATCGC TCGTGCTGCG CAAGATGGAG CGCACCGGCG TGCTGATCGA CGACGCGCTT
CTGCAGGCCC AAAGCACCGA GATCGCGACG CGCCTCATCG AGCTCGAGGG CCAAGCGTAC
GAACTGGCCG GCGGCGAGTT CAATCTCGGC TCGCCGAAGC AGATCGGGCA GATCTTCTTC
GAGAAGCTGC AACTGCCGGT CGTGAAAAAA ACGCCGAGCG GCGCACCGTC GACCGACGAA
GAAGTGTTGC AGAAGCTGGC CGAGGATTAC CCGCTGCCGA AGCTGCTGCT CGAGCATCGC
GGGCTGTCGA AGCTGAAGTC GACCTACACC GACAAGCTGC CGCGCATGGT GAATCCGGCG
ACGGGCCGCG TGCACACGAA CTATGCGCAG GCCGTCGCGG TCACGGGTCG GCTCGCATCG
AACGATCCCA ATCTTCAGAA CATTCCGGTG CGCACGGCCG AAGGCCGGCG GATCCGCGAA
GCGTTCATCG CATCGCCCGG CCACCGGATC GTGTCGGCCG ACTATTCGCA GATCGAACTG
CGGATCATGG CGCACATCTC CGGCGACGCG TCGCTCTTGC GCGCGTTCGC GCAAGGCGAG
GACATCCACC GCGCAACTGC AGCCGAAGTG TTCGGCGTGA CGCCGCTGGA GGTCAACTCC
GACCAGCGCC GGATCGCGAA GGTGATCAAC TTCGGGCTCA TCTACGGGAT GAGCGCGTTC
GGCCTCGCGT CGAACCTCGG CATCACGCGC GATGCGGCGA AGCTCTATAT CGACCGCTAC
TTCACGCGCT ACCCGGGCGT GGCGCAGTAC ATGGAAGACA CGCGCACGGC GGCGAAGGAC
AAGGGCTACG TCGAAACCGT TTTCGGCCGT CGCCTGTGGC TGCCGGAGAT CAACGGCGGC
AACGGCCCGC GCCGTCAGGC CGCCGAGCGC GCGGCCATCA ATGCACCGAT GCAGGGCACG
GCGGCCGACC TGATCAAGCT GTCGATGATC GCGGTGGACG ACTGGCTCAC GCGCGACCGG
CTCGCGTCGC GGATGATCAT GCAGGTGCAC GATGAACTGG TGCTCGAGGT GCCCGACGAC
GAACTGTCGC TCGTGCGCGA GAAACTGCCG GAAATGATGT GCGGTGTGGC GAAGCTGAAG
GTGCCGCTGG TCGCCGAAGT GGGCGCCGGC GCGAACTGGG AAGAGGCACA CTGA
|
|---|
| Protein sequence | MPEERNLEGK TLLLVDGSSY LYRAYHAMPD LRGPGGEPTG ALYGIINMLR RMRKEVSAEY
SACVFDAKGK TFRDDLYADY KANRPSMPPD LALQVEPIHG AVRALGWPLL MVEGVEADDV
IGTLAREAER HGMNVIVSTG DKDLAQLVSD RVTLVNTMTN ETLDRDGVIA KFGVPPERII
DYLALIGDTV DNVPGVEKCG PKTAVKWLSQ YDSLDGVIEH AGEIKGVVGD NLRRALDFLP
LGRTLVTVET ACDLAPHLES IEASLRTDGE ARDLLRDIFA RYGFKTWLRE VESAPAEGGG
ADAPEGDPAP VIAADIVREY DTIQTWAQFD AWFAKIDAAA LTAFDTETTA LDPMIARLVG
LSFSIEPGKA AYLPVAHRGP DMPEQLPIDE VLARLKPWLE SADRKKVGQH LKYDAQVLAN
YGIELNGIEH DTLLESYVLE SHRTHDMDSL ALRHLGVKTI KYEDVAGKGA KQIGFDEVAL
EQAAAYAAED ADITLQLHQA LYPQVAREAG LERVYRDIEM PVSLVLRKME RTGVLIDDAL
LQAQSTEIAT RLIELEGQAY ELAGGEFNLG SPKQIGQIFF EKLQLPVVKK TPSGAPSTDE
EVLQKLAEDY PLPKLLLEHR GLSKLKSTYT DKLPRMVNPA TGRVHTNYAQ AVAVTGRLAS
NDPNLQNIPV RTAEGRRIRE AFIASPGHRI VSADYSQIEL RIMAHISGDA SLLRAFAQGE
DIHRATAAEV FGVTPLEVNS DQRRIAKVIN FGLIYGMSAF GLASNLGITR DAAKLYIDRY
FTRYPGVAQY MEDTRTAAKD KGYVETVFGR RLWLPEINGG NGPRRQAAER AAINAPMQGT
AADLIKLSMI AVDDWLTRDR LASRMIMQVH DELVLEVPDD ELSLVREKLP EMMCGVAKLK
VPLVAEVGAG ANWEEAH
|
|---|
| |