Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3739 |
Symbol | |
ID | 6181493 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 711696 |
End bp | 712478 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641683509 |
Product | cationic amino acid ABC transporter, periplasmic binding protein |
Protein accession | YP_001810422 |
Protein GI | 172062771 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.40213 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.421075 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAGAC TGATTGCCGC CGTTTCGATC GCCCTGCTCG CGGTATCGGC GGGCCCCGCC GTCGCGAAGG ACTGGACCAC GCTGCGCTTC GGCACCGACG CCAGCTACGC GCCGTTCGAA TCGAAGGCGC CCGACGGCAA GCTCGTCGGC TTCGACATCG ATCTCGGCAA CGAAATCTGC GCGCGGCTGA AGGCGAAGTG CGTGTGGCTG GAGAACGATT TCGACGGCAT GATCCCGGCG CTGAAGGCGA AGAAGTTCGA CGCGGTGCTG TCGTCGATGT CGATCACGCC GCAGCGCGCG GAGCAGATCG GCTTCACGAC GAAGATCTAC AACCAGCCGA CGCGGCTCGT CGTGAAGAAG GGTTCATCGC TGCTGCCGAC GGCCGAATCG CTGAAGGGCA AGTCGATCGG CGTCGAGCAG GGCACGACGC AGGAAGCGTA TGCGAAGGCG TACTGGGCGA AGCAAGGCGC GAACGTCGTG TCGTACCAGA ACCAGGACGG CGTGTATGCC GACCTCACGT CGGGCCGCCT CGACGCCGCG CTGCAGGACG AGGTGCAGGC CGCGATCGGG TTCCTGAAGT CGCCGCGCGG CGCAGGCTAC CAGTTCGTCG GGCCCGAACT CATCGACGAG AAGGTGCTCG GCATCGGCGC CGGCATCGGG CTGCGCAAGG AAGACACCGA CCTGAAGGCG AAGATCGACC GCGCGATCCT CGACATGGTC AAGGACGGCA CCTACAAGCG GCTCGCGTCG AAGTACTTCG ACTTCGATAT CTACGGCGGC TGA
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Protein sequence | MKRLIAAVSI ALLAVSAGPA VAKDWTTLRF GTDASYAPFE SKAPDGKLVG FDIDLGNEIC ARLKAKCVWL ENDFDGMIPA LKAKKFDAVL SSMSITPQRA EQIGFTTKIY NQPTRLVVKK GSSLLPTAES LKGKSIGVEQ GTTQEAYAKA YWAKQGANVV SYQNQDGVYA DLTSGRLDAA LQDEVQAAIG FLKSPRGAGY QFVGPELIDE KVLGIGAGIG LRKEDTDLKA KIDRAILDMV KDGTYKRLAS KYFDFDIYGG
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