| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3738 |
|---|
| Symbol | |
|---|
| ID | 6181492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 709229 |
|---|
| End bp | 710701 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641683508 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_001810421 |
|---|
| Protein GI | 172062770 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.239334 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.543617 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGCAA GGTCACCCGA CGCAAACGTG ACGGCGGCGC CCGAGATGCC GCTCGTATCC
GTTACCGCCC CCGAGGCCGG ACGCAAGCTG TTCGTGATCA TGCGTTCGCC GGACGAGCCG
TTGCTGGCGC AACTGCGCGG GCTCGGCTGG GATATCTCGA TCGCCAAGAC AGCCGGCGCC
GCGCAGAACA TGACGTCCGG CGTAAACGTC GCCGCCGGGC TCATCGATTT CTCCGGATTC
ACGTCGCGCG ACTATCCCGC GCTGAAGGCG TGCCTGAGCC AGGCGGCGAT CGGCTGGATT
TCCGTCGCGC AGGCCGGTGT CACGATCAGC CCCGCCGTGC GCGAAATGAT CCGCAGCTAC
TGTTTCGATT ACGTGACGCT GCCGTTGCCG CACGAATGGA TTTCGCACGT GCTCGGCCAT
GCACGTGGGA TGGCCGCGCT CGATCGCGTC GACGGCGCGG CCTACGCGGC GTCGATCGGC
GAGCACGGGA TGATCGGCAA CTGCGAAGCG ATGCAACAGT TGTTCAGCAC GATTCGCAAG
GTCGCGAAAA CCGACGCGAG CGTGTTCATC TCCGGCGAGT CGGGCACCGG CAAGGAACTG
ACGGCGCTCG CGATCCACGA GCGCTCGGGG CGCGGCAAGG GCCCGTTCGT CGCGATCAAC
TGCGGCGCGA TTCCGCATCA CCTGCTGCAG TCGGAACTGT TCGGCTACGA GCGCGGCGCA
TTCACCGGGG CCAACCAGCG GCGCGCGGGC CGGATCGAAT CCGCGAACGG CGGCACGCTG
TTTCTCGACG AAATCGGCGA CATGCCGGTC GAAAGCCAGG CGAGCCTGCT GCGCTTCCTG
CAGGAAGGGA AGATCGAGCG GCTCGGCGGG CAGGAATCGA TTTCGGTCGA TGTGCGGATC
ATCTCGGCGA CGCACGTGGA TCTTGACGGC GCGGTCGAAG CCGCACGCTT TCGCGCGGAC
CTCTATCACC GGCTCTGCGT GCTGCGCATT CACGAGCCGC CGCTGCGCGC GCGCGGCAAG
GACATCGACA TCCTCGCGCA TTACGTGCTG CAGAAATACA AGGCCGACAG CGGCCGCAAG
ATCAGCGGCT TCACGTCGGC CGCGCTCGAC GCGATGCGCC GCTACGAGTG GCCCGGCAAC
GTGCGCGAGC TGATCAACCG GGTGCGCCGC GCGATCGTGA TGGCGGAGAG CCGGCTGCTG
ACGCCGAACG ATCTCGGGCT CGAGACGCCG GGCGAAACGG AGCCCGTGAC GCTCGAACAG
GCGCGTTCGC TCGCCGAGCG CACCGCGATC GAGAACGCGC TGCTGCGCAA CGATCACCGG
ATCAACAAGG CCGCCGCCGA ACTCGGCATC TCGCGCGTGA CGCTGTACCG GATGATGATC
GAGCACGGGC TCAACGACCA CGACAACAAC GGCGACAACG GCGGGAAGGA CGGTTCACCG
CCCGGCGACG CCGATCATCA GCGCGTCGGC TGA
|
|---|
| Protein sequence | MVARSPDANV TAAPEMPLVS VTAPEAGRKL FVIMRSPDEP LLAQLRGLGW DISIAKTAGA
AQNMTSGVNV AAGLIDFSGF TSRDYPALKA CLSQAAIGWI SVAQAGVTIS PAVREMIRSY
CFDYVTLPLP HEWISHVLGH ARGMAALDRV DGAAYAASIG EHGMIGNCEA MQQLFSTIRK
VAKTDASVFI SGESGTGKEL TALAIHERSG RGKGPFVAIN CGAIPHHLLQ SELFGYERGA
FTGANQRRAG RIESANGGTL FLDEIGDMPV ESQASLLRFL QEGKIERLGG QESISVDVRI
ISATHVDLDG AVEAARFRAD LYHRLCVLRI HEPPLRARGK DIDILAHYVL QKYKADSGRK
ISGFTSAALD AMRRYEWPGN VRELINRVRR AIVMAESRLL TPNDLGLETP GETEPVTLEQ
ARSLAERTAI ENALLRNDHR INKAAAELGI SRVTLYRMMI EHGLNDHDNN GDNGGKDGSP
PGDADHQRVG
|
|---|
| |