| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3726 |
|---|
| Symbol | |
|---|
| ID | 6180457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 693974 |
|---|
| End bp | 695152 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641683496 |
|---|
| Product | polysaccharide export protein |
|---|
| Protein accession | YP_001810409 |
|---|
| Protein GI | 172062758 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.489348 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.448229 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAAAC GTCCCATGCG CCCGCTGGCG CTCGCCGTCG CGATGACGAC ATTCCTGTCG
GCCTGCGCGA CCGCGCCCGG CAACTATCTC GATTCGTCGA ACCTGAAGGA CGAAGGCCGC
CAGGGGCAGG CCGAAACCTA TCCGGTTCAT TACATCGACG CGAAGCTGGT GATGGATCAG
CTGCAGAAGC AGCAGGTCGA GCACCCGCTG CCGCCGGGCC GTTACACCGA TCCGTCGCAA
TACGTCTACC GCGTCGGCCC GCAGGACATC CTCGGCGTCA CGGTGTGGGA TCACCCCGAG
CTGACGACGC CGCAGGGCCA GTCGTTCTCG AGCGGCGGCA ACACGACGCA GTCGGTCGCG
GGCGCGCTCC AGCAGCCGTA TACGACCGCG CTGCCGGGGC AGGCCGATCC GTACGGCCAG
ACCGTGTCCG CCGACGGCTC GATCTTCTTC CCGTTCGTCG GCCGCATTCA CGTGGCGGGC
AAGACGGTCG CGCAGATCCG CGAGCAGATG GCCTCCACCC TCGCGCGCTA TGTGAAGAAT
CCGCAGCTCG ACGTGCGCGT GCTGTCGTTC CGCAGCCAGA AGATACAGGT GACGGGCGAG
GTGAAGCAGC CGGGCCCGCT CGCGGTGAGC GACGTGCCGC TGACGCTGGT CGACGCGATC
TCGCGCTCGG GCGGCTCGAC CAACGAGGCC GACCTGCAGC GCGTGCGCCT GACGCGCGAC
GGCAAGCTCT ACACGCTTGA CGCGAACGGC GTGCTCGATC GCGGCGAAGT GAAGCAGAAC
GTGATGCTGC AGCCGGGCGA CATCGTCAAC GTGCCGGACC GCAGCGACAG CCGCGTGTTC
ATCATGGGCG AAGTCAAGAC GCCGGTCACG GTGCCGATGC TCAAGGGCAG GCTGACCATC
GCCGACGCGC TCACCGCCGG CGGCGGCATC CTCGACACCG ATGCGAACCC GCGCAAGATC
TACGTGATGC GCGGGATGCG TGACAACCCG ACGAAGCCGG AAGTGTATCG CCTCGACATG
ACGCAGCCGG ATGCGCTGAT GCTGTCGAGC CGCTTCCCGC TCCAGCCGCT CGATGTCGTC
TACGTCAGCA CGGCCGGCTC GGTGCAGTTC AACCGTGTGC TGCAGCAGGT GTTGCCGACG
ATCCAGACGA TCTTCTACAT GCGGCAGATC ACGCGCTGA
|
|---|
| Protein sequence | MLKRPMRPLA LAVAMTTFLS ACATAPGNYL DSSNLKDEGR QGQAETYPVH YIDAKLVMDQ
LQKQQVEHPL PPGRYTDPSQ YVYRVGPQDI LGVTVWDHPE LTTPQGQSFS SGGNTTQSVA
GALQQPYTTA LPGQADPYGQ TVSADGSIFF PFVGRIHVAG KTVAQIREQM ASTLARYVKN
PQLDVRVLSF RSQKIQVTGE VKQPGPLAVS DVPLTLVDAI SRSGGSTNEA DLQRVRLTRD
GKLYTLDANG VLDRGEVKQN VMLQPGDIVN VPDRSDSRVF IMGEVKTPVT VPMLKGRLTI
ADALTAGGGI LDTDANPRKI YVMRGMRDNP TKPEVYRLDM TQPDALMLSS RFPLQPLDVV
YVSTAGSVQF NRVLQQVLPT IQTIFYMRQI TR
|
|---|
| |