Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3706 |
Symbol | |
ID | 6181240 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 669643 |
End bp | 670431 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641683476 |
Product | short chain dehydrogenase |
Protein accession | YP_001810389 |
Protein GI | 172062738 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.214246 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACAGTCG TTTCCTCGCG CCTCGCAGGC AAGTGCGCGT ACATCACGGG CGCCGCCGGC GGCCTAGGAC GCGCGATCGC GCGCCGGATG GTCGAGCAGG GCGCGCGCGT GTTCCTGACC GACATCGCCG ACGCGGCCGT GCTCGACACC TTCGCGCACG AACTCAATGC GGGGCACGCG GCGCCTGTCG CGTTCGCGGC CACGCAGGAC GTGCGCGACG AGGGACACTG GCAGGCGCTG CTCGCGCAGG CGAACGAAGC GATGGGCGGC TTGTCGGTGC TCGTCAACAA TGCGGGCGTC GGGTCGATCG GCACGCCCGC GCAGATCGAG ATCGACGAGT GGCGGCGCGT GATGGCGATC AACGTCGAGA GCATCGTGCT CGGCTGCAAG CATGCGCTGC CGTACCTCGG CGCGAGCCGG CCGGCGTCGA TCATCAACAT CTCGTCGGTG GCCGCGTTCA AGGTCGAGCC GGAATTCACC GCGTACAACG CGTCGAAGGC CGCGGTCGCG TCGCTGACGA AGTCGGTCGC GATCGATTGC GCGCGCCGCG AGCTCGACGT GCGCTGCAAC TCGATTCACC CGGCGTTCAT TCGCACGGGG ATCGTCGAGC CGCTGTTCCA GTCGCTCGGC GAACGCGACG CGACGCGCAA GCTCGCGCGC GGCATTCCGC TGCGCCGGCT CGGCGATCCG GACGACGTCG CGCATGCGGC CGTCTATCTG GCGTCGGACG AAAGCCGCTT CGTGACGGCC GCCGAACTCG TGATCGACGG CGGCATGTGC GCGGTCTGA
|
Protein sequence | MTVVSSRLAG KCAYITGAAG GLGRAIARRM VEQGARVFLT DIADAAVLDT FAHELNAGHA APVAFAATQD VRDEGHWQAL LAQANEAMGG LSVLVNNAGV GSIGTPAQIE IDEWRRVMAI NVESIVLGCK HALPYLGASR PASIINISSV AAFKVEPEFT AYNASKAAVA SLTKSVAIDC ARRELDVRCN SIHPAFIRTG IVEPLFQSLG ERDATRKLAR GIPLRRLGDP DDVAHAAVYL ASDESRFVTA AELVIDGGMC AV
|
| |