Gene BamMC406_3706 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3706 
Symbol 
ID6181240 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp669643 
End bp670431 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content69% 
IMG OID641683476 
Productshort chain dehydrogenase 
Protein accessionYP_001810389 
Protein GI172062738 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.214246 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGTCG TTTCCTCGCG CCTCGCAGGC AAGTGCGCGT ACATCACGGG CGCCGCCGGC 
GGCCTAGGAC GCGCGATCGC GCGCCGGATG GTCGAGCAGG GCGCGCGCGT GTTCCTGACC
GACATCGCCG ACGCGGCCGT GCTCGACACC TTCGCGCACG AACTCAATGC GGGGCACGCG
GCGCCTGTCG CGTTCGCGGC CACGCAGGAC GTGCGCGACG AGGGACACTG GCAGGCGCTG
CTCGCGCAGG CGAACGAAGC GATGGGCGGC TTGTCGGTGC TCGTCAACAA TGCGGGCGTC
GGGTCGATCG GCACGCCCGC GCAGATCGAG ATCGACGAGT GGCGGCGCGT GATGGCGATC
AACGTCGAGA GCATCGTGCT CGGCTGCAAG CATGCGCTGC CGTACCTCGG CGCGAGCCGG
CCGGCGTCGA TCATCAACAT CTCGTCGGTG GCCGCGTTCA AGGTCGAGCC GGAATTCACC
GCGTACAACG CGTCGAAGGC CGCGGTCGCG TCGCTGACGA AGTCGGTCGC GATCGATTGC
GCGCGCCGCG AGCTCGACGT GCGCTGCAAC TCGATTCACC CGGCGTTCAT TCGCACGGGG
ATCGTCGAGC CGCTGTTCCA GTCGCTCGGC GAACGCGACG CGACGCGCAA GCTCGCGCGC
GGCATTCCGC TGCGCCGGCT CGGCGATCCG GACGACGTCG CGCATGCGGC CGTCTATCTG
GCGTCGGACG AAAGCCGCTT CGTGACGGCC GCCGAACTCG TGATCGACGG CGGCATGTGC
GCGGTCTGA
 
Protein sequence
MTVVSSRLAG KCAYITGAAG GLGRAIARRM VEQGARVFLT DIADAAVLDT FAHELNAGHA 
APVAFAATQD VRDEGHWQAL LAQANEAMGG LSVLVNNAGV GSIGTPAQIE IDEWRRVMAI
NVESIVLGCK HALPYLGASR PASIINISSV AAFKVEPEFT AYNASKAAVA SLTKSVAIDC
ARRELDVRCN SIHPAFIRTG IVEPLFQSLG ERDATRKLAR GIPLRRLGDP DDVAHAAVYL
ASDESRFVTA AELVIDGGMC AV