| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3674 |
|---|
| Symbol | |
|---|
| ID | 6181049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 628901 |
|---|
| End bp | 630541 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641683444 |
|---|
| Product | acetolactate synthase |
|---|
| Protein accession | YP_001810357 |
|---|
| Protein GI | 172062706 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.839187 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAT CGGATCTGTT CGTGAAGGCG CTGGAAGCCG AAGGCGTCGA GTATGTATTC
GGCATTCCCG GCGAGGAAAA CCTCGATCTG CTCGAATCGC TGCGGCGCTC GAAGATCAAG
CTCGTGCTGA CCCGGCACGA GCAGGCGGCC GGCTTCATGG CCGCCACCTA CGGCCGCCTG
ACGGGCCGCA CCGGCGTGTG TCTCGCGACG CTCGGGCCGG GCGCGACCAA CTTCGTGACG
GCCGCCGCGT ATGCGCAGCT CGGCGGCATG CCGATGCTGA TGATCACCGG GCAGAAGCCG
ATCAAGTCCA GCAAGCAGGG CCACTTCCAG ATCGTCGACG TCGTCGACAT GATGCAGCCG
CTGACGAAGT TCACGCGGCA GATCGTGTCG ATCGGCAACA TTCCGTCGGC GGTGCGCGAG
GCGTTTCGCC GCGCGGAAGA GGAGCGTCCG GGCGCCGCGC ACCTCGAGCT GCCGGAGGAC
ATCGCGCACG AGGAGGGCGA CGGCAAGCCG ATTCCGCGCA GCTACAGCCG GCGGCCGATC
GCCGAGGAGA AGGCGGTCGC GCACGCGATC GACGCGATCC AGGCCGCGCG CCATCCGCTG
TTGATGATCG GTGCGGGCGG CAACCGCAAG ACGACCTGCA AGATGCTGCT CGAATTCGTC
GACAAGACGG GCATCCCGTT CTTCACGACG CAGATGGGCA AGGGCGTGAT CGACGAAACG
CATCCGCTGT GGCTCGGCAA CGCGACGCTG TCGGACGGCG ACTTCGTGCA TCGCGCGATC
GAGCATGCGG ACTGCATCAT CAATGTCGGC CACGACGTGA TCGAGAAGCC GCCGTTCTTC
ATGCGCGCGG ACGACAAGAC GGTGATCCAC GTGAACTTCC TCGGCGCGCA GGTCGATCCC
GTCTATTTCC CGCAGATCGA GGTGGTCGGC GACATCGCGA ACGCGGTGTG GCAGATGAAG
GAAGCGGTCA CGCGCCAGCC GCACTGGGAT TTCGAGCGCT TCACGATGAT CAAGGAGCAT
TTCGACGCGC ACCTGCAGAA GGGCCAGCAC GACCCGCGCT TCCCGATGTA TCCGGTGCGG
ATCGTGAACG ACCTGTACAA CGCGCTGCCC GTCGACGGGA TCGTCTGCCT CGACAACGGG
ATGTACAAGA TCTGGTTCGC GCGCTACTGG CGTGCGCACG AACCGAACTC GCTGCTGCTC
GACAACGCGC TCGCATCGAT GGGCGCGGGC CTGCCGTCGG CGATCGCGAC GAAGATCGTG
CACCCGCAGC GCAAGGTGAT CGCCGTGTGC GGCGACGGCG GCTTCATGAT GAATTCGCAG
GAACTCGAAA CGGCCGTGCG GCTGAAGCTC GACCTCGTCG TGATGATCCT GCGCGACGAT
GCGTTCGGGA TGATCCGCTG GAAGCAGGAG AACATGAATT TCCCCGATTT CGCGATGACG
CTGAAGAATC CCGATTTCGT GTCGTATGCG CAGAGCTACG GCGCGCATGG GCATCGCGTC
GAAGCGGCCG ATGATCTCGA GCCGCTGTTG CGCGACTGCT TCGCGACGCC GGGCGTGCAT
GTGATCGACG TGCCGATCGA CTATTCGGAC AACGAGCGCG TGCTCAACCG CGAAATCAAG
CGCCTGTCGG CGCAACTCTG A
|
|---|
| Protein sequence | MKASDLFVKA LEAEGVEYVF GIPGEENLDL LESLRRSKIK LVLTRHEQAA GFMAATYGRL
TGRTGVCLAT LGPGATNFVT AAAYAQLGGM PMLMITGQKP IKSSKQGHFQ IVDVVDMMQP
LTKFTRQIVS IGNIPSAVRE AFRRAEEERP GAAHLELPED IAHEEGDGKP IPRSYSRRPI
AEEKAVAHAI DAIQAARHPL LMIGAGGNRK TTCKMLLEFV DKTGIPFFTT QMGKGVIDET
HPLWLGNATL SDGDFVHRAI EHADCIINVG HDVIEKPPFF MRADDKTVIH VNFLGAQVDP
VYFPQIEVVG DIANAVWQMK EAVTRQPHWD FERFTMIKEH FDAHLQKGQH DPRFPMYPVR
IVNDLYNALP VDGIVCLDNG MYKIWFARYW RAHEPNSLLL DNALASMGAG LPSAIATKIV
HPQRKVIAVC GDGGFMMNSQ ELETAVRLKL DLVVMILRDD AFGMIRWKQE NMNFPDFAMT
LKNPDFVSYA QSYGAHGHRV EAADDLEPLL RDCFATPGVH VIDVPIDYSD NERVLNREIK
RLSAQL
|
|---|
| |