Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3658 |
Symbol | |
ID | 6180390 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 614369 |
End bp | 615493 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641683428 |
Product | type VI secretion protein |
Protein accession | YP_001810341 |
Protein GI | 172062690 |
COG category | [S] Function unknown |
COG ID | [COG3520] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03347] type VI secretion protein, VC_A0111 family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.44997 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.507038 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCAT CGATCGATCG GATGAGCGCC GAAGCCGCTG AATCGAAGGG TCTGCCGGCC GTGGTTGCGA GGCTGTTCGA GCGGGCGCCG AAGATGACTT TCATGCAGTT CTGTCGTCTT TTGGAGGCAT GTGCGCCCGA ACGTCCCGGA TTCGGCACAC GCGACACGCC GGCGTACGAG CCGGTGAGAT TCCGGCCGCG TCCTCGGTTG GGGTTCCCGG CAGGCGAGAT GGCCGCGGTC GAATTCGACG ACGAGCATCC CGATGCGCCG CCGACCGTAC GCACGACCTT CATGGGGCTT TACGGCGTCG ATGCCGCGAT GCCGTCGCAT ACGATCGACG AGATCGCGTT GCGCGAAGAG GGGCATGAGG CGGTGGAAGC CTTTCTCGAT CCATTCAATC ACCGCATCGC GACGTTGCTG TATCGCGCAT GGAAGAAGTA TCGGTATCCT GAGCGTTTCC GGGCCGGTGG TGTCGACGAT TATTCGCAGA GCCTGTTGTG TCTGCTGGGG TTCGGATGGG GCGACAAGCC TTTGCGGGCA GGCCTGCCGG ATTCGCGGAT GCTCGCGTTG TCGGGGCTGC TGATCCAGCG CACGCGGACG TCCGAAGGGC TCGCCGGTGT GGTGGCGCTC GCCGCGCCGG GGGCGGAGGT TCGCGTCGAC GAGTTCTGGG CGGTGACGAC GAGTACCGGT CGGCCGAAGC CGTTGACGTC GACGAAGCCG GCTGCGGGCG GGCTGTCGGA CGGCAAGCGC AACGGGCTCG GTGGCGGTTA CGTGCTCGGC AGGCGTCTCA CGTATCGCAG CCGGGCAGTG CGCGTGACGT TGCGGCCAGC CGATGCGCGG CAGGCTCAGG ATCTGCTGCC GGGCGCATGG CTGCATCGAG AGGTGATGGC ATTCATCCAG CTGTATGTCG GCATCAAGGC CGATGTGTAT TTGCGGATGG AGGTGTCGTC ACGGTTCGTT CCGCATCCGT CCGTCGGCAT CGAGCGTACC GGCCCGGCGC CGCGTCTCGG CTGGACGACG GTGTTGCCGT CTGCCGACGA ACGGCTGATC GATATTGCGC TGGGTGCCTA CGAGGCATTG CCGGCGCCGC AACCCAACCC GCATCTCGTG CCGCGCACGA TCTGA
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Protein sequence | MSASIDRMSA EAAESKGLPA VVARLFERAP KMTFMQFCRL LEACAPERPG FGTRDTPAYE PVRFRPRPRL GFPAGEMAAV EFDDEHPDAP PTVRTTFMGL YGVDAAMPSH TIDEIALREE GHEAVEAFLD PFNHRIATLL YRAWKKYRYP ERFRAGGVDD YSQSLLCLLG FGWGDKPLRA GLPDSRMLAL SGLLIQRTRT SEGLAGVVAL AAPGAEVRVD EFWAVTTSTG RPKPLTSTKP AAGGLSDGKR NGLGGGYVLG RRLTYRSRAV RVTLRPADAR QAQDLLPGAW LHREVMAFIQ LYVGIKADVY LRMEVSSRFV PHPSVGIERT GPAPRLGWTT VLPSADERLI DIALGAYEAL PAPQPNPHLV PRTI
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