| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3657 |
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| Symbol | |
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| ID | 6180208 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 612558 |
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| End bp | 614372 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641683427 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001810340 |
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| Protein GI | 172062689 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.360075 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.494654 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAACA ACGATCCCAT CCTGCGCTAC TACGAAGCGG AAATGCGCTA TCTGCGCGAA
TCCGGCAAGG AATTCGCGAA GGCGCATCCC GATCGCGCGC GCCTGCTCAA CCTCGACCGC
GTCGGCGATC GCGATCCGTA TGTCGAACGC CTGTTCGAAG GGTTTGCGTT TCTGACGGGC
CGGCTCCAGC AAAAACTCGA CGACGAACTG CCCGAACTGA CCGAAGGGCT CGTCAGCTTG
TTGTGGCCGC ACTATCTGCG GATGATTCCT TCGCTGTCGA TCGTCGAGCT GACGCCGTTC
GCGGAGAAGC TGCAGAAAAC GGTAGTGGTC CCGGCCGGCG TGCCGGTGCG CTCCGCGCCG
ATCAACGTGC CGGCCGCGGG CGGCGCGCAG GGCGCGGCGC CGCTGACCGT GCGATGTCTG
TACCGGACCA CGCAGGATGT TGCGCTGCAG CCGGTGTCGC TCACGCATGC CGGGCCGGCC
GTGCGACACG ACGGGCGATC GGTGATCCGC TTCGGCTTCG CGTTGCAAGC GTCGGCGCTG
CGCAAGGAGA CGGATCTGTC GCGGCTGCGG CTGCATTTGA ACGCCGATTT GCCGACTGCA
TTCGCGATGC ATCTTGCGCT GACGCGTCAG GTCGACGCGA TTCACTGGCG CGTTCCGGAA
ATACGCGATG GCGAATCCGT GCCGCTGCCG GGCGTCACGA TCGAGCCGGC GGGATTTTCG
ACGGAAGAAC GGCTGTGGCC CAAAGCCGAT GCGGCGTTCT CCGGATATCA GTTGCTACTT
GAATACTTTA CGTTTCGCGA GAAATTCCTG TTCGTCGATC TGTGCGGACT CGACATCACG
AAGCTGCCTG AAAAATCGAC CCGCTTCGAA CTGGAGATCG TTCTGAAGGA TGCCTATCCG
TCGGATCAGC GATTCAGCGT GGACAACGTG CGACTGTTCT GTTCACCGGT GATCAACCTG
TTCGAACTGG ATGCCGAGCC GATCGAGATC GACCATCACG AAACCGAGTA TCGCGTCGTG
CCGGCCGGTC ATCAGGGCGA GCATGTCGAA ACGTATTCGG TCGATGCGAT CGCGACGTTC
GATCACGATA CGGCCGAGCG ATACGAATAC GTGCCGTTCA CGACCTTCCG GCACCGCGGC
GGCATGCTGC GGCATGAGGC GCCGGAGCGC TATTTCCACA CACGCGTGCG TTCTGGCGTA
TCGGGGCTGC ACGAAATGTG GGTGATTCTC GGCGGGCATG CGTGGGAAAC GATGGATACG
CTGCCGGAGG AAAGCCTGTC GCTGCGCGTA ACGGGCACGA ACGGGCTACT GCCGCGCAAG
GGGCTGCGGG AGGCAAGTCT AAACGAGCTG GCGGCCAGCA CGCCGAACGT CGCGAGCGTG
CGCAATCTCG TGTCGCCGAC GTTGCCGCTC CATCCGCCGA CCGAAGATCG TTTCCAGTGG
CGTGTGCTGT CGCATCTCGC CCCCAACTTC CTGTCGATGA TGAACGCGGA GGTGCTGCGT
GGCGCTTTGG CGCTGTACGA CTGGACGAAC GACGAACTGA ACCGGCGGCG GCTCGCCGGC
ATCCTGCATG TCTCGCAGGA AATGATCCAG GAAGTGTCGG GCGGCGCGGT CGAACGCGGC
GTGCTGATCG AGGTCACGCT CGATGCGCAT GCGTTCTCGG GCGAAGGCGA CGTGATGCTG
TTCGGCGAGT TGCTGCACCG GTTCTTCGGT GCATACGCGG AGATCAATCT GTTCACGAAG
CTGGCGATCG TCAGCCTGCC ATCGCGGTCG CGGACGGAGT GGCCGCGCAG CAAGGCGGGG
CGGGCACCGC TATGA
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| Protein sequence | MDNNDPILRY YEAEMRYLRE SGKEFAKAHP DRARLLNLDR VGDRDPYVER LFEGFAFLTG
RLQQKLDDEL PELTEGLVSL LWPHYLRMIP SLSIVELTPF AEKLQKTVVV PAGVPVRSAP
INVPAAGGAQ GAAPLTVRCL YRTTQDVALQ PVSLTHAGPA VRHDGRSVIR FGFALQASAL
RKETDLSRLR LHLNADLPTA FAMHLALTRQ VDAIHWRVPE IRDGESVPLP GVTIEPAGFS
TEERLWPKAD AAFSGYQLLL EYFTFREKFL FVDLCGLDIT KLPEKSTRFE LEIVLKDAYP
SDQRFSVDNV RLFCSPVINL FELDAEPIEI DHHETEYRVV PAGHQGEHVE TYSVDAIATF
DHDTAERYEY VPFTTFRHRG GMLRHEAPER YFHTRVRSGV SGLHEMWVIL GGHAWETMDT
LPEESLSLRV TGTNGLLPRK GLREASLNEL AASTPNVASV RNLVSPTLPL HPPTEDRFQW
RVLSHLAPNF LSMMNAEVLR GALALYDWTN DELNRRRLAG ILHVSQEMIQ EVSGGAVERG
VLIEVTLDAH AFSGEGDVML FGELLHRFFG AYAEINLFTK LAIVSLPSRS RTEWPRSKAG
RAPL
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