| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3648 |
|---|
| Symbol | |
|---|
| ID | 6180051 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 594684 |
|---|
| End bp | 596033 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641683418 |
|---|
| Product | type VI secretion protein |
|---|
| Protein accession | YP_001810331 |
|---|
| Protein GI | 172062680 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGATCG ACAAACCGCT CTGGCATGAA GGGCTGATTC TTACGCAGCA GCATTTCCAG
CAGCAGGAGC GCTGGAACGG GTTCGCGCTG CAACAACTGG CGTCGGCTGT CGCCGTATCG
CCATGGGGAA CGCTGAACGT CGACATCGAC GAGGAGGCGC TGTCCTCCGG CCGCCTGAAG
CTCGCGCGGC TGCAACTGCG ATTCCCTGAC GGCACGCCGA TCGACACGAC CGTCTCCGAC
GCGTTGCCGC CGGCCCGCGA CCTCGTCAGC GAAATCCCCG CCGATACGCA GACCGTCGAC
GTACTCGCCG CGCTCGCGCT ACCCGACGCG AACGGCAGCA ACTGCCGTTT CGACGAAACG
GCGCTGGCCC GCCCGCGTCG CGCGTATCGC GAGTTCGTCA AGGTGACGGA CCTGAACGGC
TCGGCCGAAA CCGAAATTGC CGCCGAGCGT CACGCCGTCC GGTTGCTGTT CGGCTTTGAA
TCGCACGCCG ACGACACGGC ATGCGCGATC GCACGCCTGA CGCGCACGAC GAGCGGGCAG
TTCCAGGTCG ATCGCCGATA CGTGCCGCCT TGTCTTGCGC TATCCGGTCA CACGCTGCAT
ATCGAACGTA TTCGGCGAAT CGCCGACATC CTCGCCGCCA AAAGCGCGCT CCTCGGTGCG
CGCCGCAGCG AGCGCATCGA GCAGGTGGCC GAGTATGGCG TCGCCGATGT CCAGCTGTTC
TGGCTCCTGC ATTGCATTCA CCAGGCGTGG CCGCAACTGC GCTTCCTCGC GTCGCACCCG
GCGCAGCCGA CCGATCGCCT GTACCAGGTG CTCGCCCAGC TGACCGGGTC GCTGATCACG
TTCTCGACGC GCGTGTCGCT GACCGACATT CCGCCCTACG ACCACGCGAG CGCCCATGAC
GTATTCGCAG CGCTCGAATC GCTGATCCGC GATCTGCTCG ACGCGATCAT TCCGTCACGC
GTCGTCTCGA TCGGGCTCTC GCATACGACG CTGACGACCT GGGTCGGTCA GTTCCGCGAC
GAGCGCATCG TCGAAGATGC CGCGGACTGG TATCTGTCCG TCAATGCCGC GTTGCCGGCC
TTCGAGCTGG TCGAACAGTT TCCGCGCCTT TGCAAGATCG GCGCACCGGA CGACGTCGAG
CACATCGTCA ATTCCGCCGT GGCGGGAATT CCGCTCAAAG CCGTGCAGCG GGTGCCCGGC
GCCATACCGG TCCGGCTGGA CAACCACTAT TTCGCGCTCG ATGCGCACGA CGCCGCGCAT
GCGCGGATGC TCGCCGCGCG CGCTTGCCAG ATCTATCTGC CCGCGTCGAT TCCGGACGCG
TCGCTCGAAC TTTATGCGGT GCTGCGCTGA
|
|---|
| Protein sequence | MRIDKPLWHE GLILTQQHFQ QQERWNGFAL QQLASAVAVS PWGTLNVDID EEALSSGRLK
LARLQLRFPD GTPIDTTVSD ALPPARDLVS EIPADTQTVD VLAALALPDA NGSNCRFDET
ALARPRRAYR EFVKVTDLNG SAETEIAAER HAVRLLFGFE SHADDTACAI ARLTRTTSGQ
FQVDRRYVPP CLALSGHTLH IERIRRIADI LAAKSALLGA RRSERIEQVA EYGVADVQLF
WLLHCIHQAW PQLRFLASHP AQPTDRLYQV LAQLTGSLIT FSTRVSLTDI PPYDHASAHD
VFAALESLIR DLLDAIIPSR VVSIGLSHTT LTTWVGQFRD ERIVEDAADW YLSVNAALPA
FELVEQFPRL CKIGAPDDVE HIVNSAVAGI PLKAVQRVPG AIPVRLDNHY FALDAHDAAH
ARMLAARACQ IYLPASIPDA SLELYAVLR
|
|---|
| |