| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3645 |
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| Symbol | |
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| ID | 6181229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 591574 |
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| End bp | 592059 |
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| Gene Length | 486 bp |
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| Protein Length | 161 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641683415 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001810328 |
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| Protein GI | 172062677 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.265959 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAATTC CGGCCTACAT GTGGCTCAAG GACGACGGTG GCGCGGACAT CAAGGGTTCG
GTAACCGTCC AGGATCGCGA GGGTAGCGTC GAACTGGTCG CGTTCGATCA TGGCGTGCAC
ATTCCGACCG ACGGCAATAC GGGCAAGCTG ACCGGCACGC GCGTGCACAA GCCGATCACG
CTGACGAAGG AGACCGACGC GTCGACGCCG TACCTGTACA AGGCCGTGAC GAGCGGCCAG
ACGCTGAAGT CGGTCGAGAT CAAGTGGTAT CGAATCGACG ACGCGGGCAA GGAAAAGGAA
TACTTCAACA CCAAGCTCGA CAACGTGAAG ATCGTCGCGG TGAAGCCGAA GATGCTCGAC
ATCAAGAACC CCGACTACGA GAAGCACAAC CATCTCGAAG ACGTGGAACT GCGTTACGAG
ACGATCACGT GGTCGTACAA GGACGGCAAC ATCATCCACA AGGACACCTG GAACGAACGT
TCCTGA
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| Protein sequence | MAIPAYMWLK DDGGADIKGS VTVQDREGSV ELVAFDHGVH IPTDGNTGKL TGTRVHKPIT
LTKETDASTP YLYKAVTSGQ TLKSVEIKWY RIDDAGKEKE YFNTKLDNVK IVAVKPKMLD
IKNPDYEKHN HLEDVELRYE TITWSYKDGN IIHKDTWNER S
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