| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3574 |
|---|
| Symbol | |
|---|
| ID | 6179860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 509510 |
|---|
| End bp | 511564 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641683343 |
|---|
| Product | pyridoxamine 5'-phosphate oxidase-related FMN-binding |
|---|
| Protein accession | YP_001810257 |
|---|
| Protein GI | 172062606 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG1018] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
[COG3576] Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.323016 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.00626441 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCAC CGACCGCCGC CGTACCGGGC TGGGAACTCG ACGTTGCGCC TTTTCATGCG
GGCGAGCTCG CCGTGCAGCA GCGCGCAGGC GTGACGGCCG CCGCGGGCGC GGCCGGCCGG
CGCGGGATCC GGCGCTTCAT GCCGGACCAG CACCGCACGT TTTTTGCGCA GCTGCCGTTC
TTCGTGCTCG GCGGCGTCGA CGCGCACGCC CAGCCGTGGG CTACGCTGCG GGTCGGGATG
CCCGGCTTCG TGACGGCGCC GGACGCGCGC ACGCTGCACA TCGACGGCGA TGCGCTGCCC
GGCGATCCGC TGGCCGGGGC GTGGCGGCCG GGTGCGCCGC TCGGCGGGCT CGGCATCGAG
TTCGACACGC GCCGGCGCAA TCGCGTGAAC GGCGTCGTGC GTGCGGTCGA CGGCGGTGCG
CTGACGATCT CGGTCGAGCA GAGCTTCGGC AACTGCGCGA AGTACATCCA GGGCCGCAAA
GCCACGTTCG TGGCGCGGGA AGGCGATGCG TCCGGCGCGG CCGACGTGTC GGACCGCTTG
AGCGACGCGG ATCGCGCGCT GCTCGCGCAG GCCGATACGT TCTTCGTCGC GAGTGCGAAC
ACGTCGGCCG ATGCGGGCGC CGCGCGCGGC GCCGACGTGT CGCATCGCGG CGGCATGCCG
GGCTTCGTGC GCGTCGACGA CGCGTGCACG CTGACGACGC CGGATTTCAG CGGCAACCGC
TTCTTCAACA CGCTCGGCAA CCTGCAGCAC GATCCGCGCG CGGGGCTGCT CTTCATCGAT
TTCGACAGCG GCGACGTGCT GTATGTCGCC GCACGGGCGG AGATCGTGTG GGATGGGCCG
CTCGTCGCGT CGTTCGACGG CGCGCAGCGG GTCGTGCGGT TTCATGTGCA CGAAGTGCGG
CGCACGCGGG GCGCGTTGCC GTTCCGGTGG TCGGCGCCCG AGCGGGCGCC GCAGTTTGCG
GCGATGGCCG AGGGCTCGCC GAACGCGGGT GCGCAGGCGG CTTCGGAGCC CGCATCCGCA
TCGCCATCCG GTTGGCGTCC GCTGCGCATC GCGAAGATCG TCGACGAAGC GCGCGCGATC
CGCTCGTTTC ATTTCGAACC GGCGGACGGC GGCGCGCTGC CGGCCCATGA AGCCGGGCAG
CATCTGACGC TGCGCATCGC GCTGCCGGAC AGCGACGCGC CCGCGATCCG CAGCTACACG
CTCTCCGATG CACCCGGCGC ACCGCGGTAC CGGATCACCG TGAAGCGCGA AGGACGCGTG
TCGGCATGGC TGCACGACCA CGCGCATGCC GGGATGACGC TCGATGCGCA GATGCCGCGC
GGCCGCTTCA CGTTCGACAT CGCGAGCCCG CGTCCGGCCG TGCTGGTGTC GGCCGGCATC
GGCATCACGC CGATGTTCGC GATGCTGCGG CGCGCGCTGG CGGACGACAC GCCGTCGCGC
CGCGTCGTGT TCGTGCACGG TGCGCGCGAT ACGGCCGACC GGCCGTTCGC GGCGGAGCTG
ACGCGCATCG CCGACGCCGA CGCACGCGTG TCGCTGCACT GGTTCGACAG CCGGCCGCAG
CGCGACGGCG CGGCGCGGCC GGGCCGCGTC GACGTCGCGC AACTGAAGCG CATCCTGCCG
TTCGACGACT ACGATTTCTA CCTGTGCGGG CCGTCCGCGT TCATGCGCGA TCTGTACGAC
GGACTGCGCG CGCTGAACGT GCCGGACGAG CGTATCCGCT TCGAGGCGTT CGGGCCGTCG
AGTGTCGTGC GCAGCGCGAC CCGCGCGGCG GAAGCGCCGC CGGTGGCTAG CGTGCTCGTC
GTGTTCCGCC GCTCCGCGCG CGACGCCGCA TGGACGGCCG CCGACGGCAC GCTGCTCGAA
TTCGCCGAAG GTCAGGGCGT GGCGGTGCCG TCCGAATGCC GGTCGGGGTC GTGCGGCACG
TGTGCGACGC GCGTGCTGTC CGGGGCGGTC GATTACGTGC AGTCGCACGA CGCGCCGGTC
GAGCCCGGTT GCGCGCTGCT GTGCGTCGCG CAGCCTGCCG AAGGGGCCGC GGAGCCGCTC
GTGCTCGACC GCTGA
|
|---|
| Protein sequence | MTAPTAAVPG WELDVAPFHA GELAVQQRAG VTAAAGAAGR RGIRRFMPDQ HRTFFAQLPF
FVLGGVDAHA QPWATLRVGM PGFVTAPDAR TLHIDGDALP GDPLAGAWRP GAPLGGLGIE
FDTRRRNRVN GVVRAVDGGA LTISVEQSFG NCAKYIQGRK ATFVAREGDA SGAADVSDRL
SDADRALLAQ ADTFFVASAN TSADAGAARG ADVSHRGGMP GFVRVDDACT LTTPDFSGNR
FFNTLGNLQH DPRAGLLFID FDSGDVLYVA ARAEIVWDGP LVASFDGAQR VVRFHVHEVR
RTRGALPFRW SAPERAPQFA AMAEGSPNAG AQAASEPASA SPSGWRPLRI AKIVDEARAI
RSFHFEPADG GALPAHEAGQ HLTLRIALPD SDAPAIRSYT LSDAPGAPRY RITVKREGRV
SAWLHDHAHA GMTLDAQMPR GRFTFDIASP RPAVLVSAGI GITPMFAMLR RALADDTPSR
RVVFVHGARD TADRPFAAEL TRIADADARV SLHWFDSRPQ RDGAARPGRV DVAQLKRILP
FDDYDFYLCG PSAFMRDLYD GLRALNVPDE RIRFEAFGPS SVVRSATRAA EAPPVASVLV
VFRRSARDAA WTAADGTLLE FAEGQGVAVP SECRSGSCGT CATRVLSGAV DYVQSHDAPV
EPGCALLCVA QPAEGAAEPL VLDR
|
|---|
| |