Gene BamMC406_3570 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3570 
Symbol 
ID6179439 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand+ 
Start bp506481 
End bp507140 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content68% 
IMG OID641683339 
ProductTetR family transcriptional regulator 
Protein accessionYP_001810253 
Protein GI172062602 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.649978 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.00133713 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGATGTCAA ATAGCGAAAT GGAGAAAGCA CTCGAAACGG AAAAACGGGG GCGCGCGTAC 
GGCGGTGTCG CGCCCGAGGT GCGCGCCGCC GAGCGGCGCG ACGCGCTGAT CCGCGCGGCG 
ACGCGCGTGT TCGGCACGGT CGGCTTCCGC AAGGCGACCG TGCGGTCGAT CTGCCAGCAA 
GCGAAGCTGA ACGACCGCTA TTTCTATGCG GCATTCGACA GCACGGAGGA TTTGCTGCGC 
TGCACCTATC TGCATCACGC GCAGCAACTG CACGACGCGG TCGAGCGCGC GGTGGCCGAG 
CGCGGCGGCG ATCTGCGCGA GCGCGTCGAC GCGGGGCTTG CCGCGTTCTT CGGCTTCCTG 
CGCGACCCGT GCGCGGCGCG CGTGCTGCTG CTCGAGGTGA TGGGCGTGAG CGCGGACACC 
GACATGACCT ACCAGCGGAT GCTGATCGAC TTCGGCAAGC TGATCATGGC GATCGGCGCG 
GCGCGCGAGG CCGTGACGCC CGCCGAGCGC ACCGAGCAGC GGCTCGTCGG GCTCGCGCTG 
GTCGGCGCGA TGACGAACGT CGGCGCGGCA TGGCTGCTCA CCGACTATCG CGATCCGGAG 
GCGCAGATGG TCGCGAGTTG CAGGAAAGTG CTGCTGGGCA CGTTGCGGGA AGAGGGGTAA
 
Protein sequence
MMSNSEMEKA LETEKRGRAY GGVAPEVRAA ERRDALIRAA TRVFGTVGFR KATVRSICQQ 
AKLNDRYFYA AFDSTEDLLR CTYLHHAQQL HDAVERAVAE RGGDLRERVD AGLAAFFGFL 
RDPCAARVLL LEVMGVSADT DMTYQRMLID FGKLIMAIGA AREAVTPAER TEQRLVGLAL 
VGAMTNVGAA WLLTDYRDPE AQMVASCRKV LLGTLREEG