| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3554 |
|---|
| Symbol | |
|---|
| ID | 6179437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 486669 |
|---|
| End bp | 488036 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641683323 |
|---|
| Product | sodium:dicarboxylate symporter |
|---|
| Protein accession | YP_001810237 |
|---|
| Protein GI | 172062586 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1301] Na+/H+-dicarboxylate symporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.325233 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGCAT CACGCATTCG CAGAACGCTT TCCAAACTCT ACGTCCAGGT TCTGATCGGC
ATCGTCGCCG GCATCCTCGT CGGGCACTTC TACCCCGATA TCGGCGCCCA GCTCAAGCCG
CTCGGCGACC TGTTCATCAA GCTGATCCGG ATGTTGCTCG CGCCGATCAT CTTTGCGTCG
GTCGTGGTCG GCATCGCGCG CATGACCGAT CTTCACGAAG CCGGCCGGGT GGGCGTCAAG
GCCGTGCTGT ATTTCGAAGC CGCGTCCACT GTCGCGCTCG TGGTCGGGAT GGCTGTCGTC
AACCTGGTCC GGCCGGGCAG CGGGATGAAT GTCGATCCGG CGAAGATCGA CGGTGCCGCA
ATCGCCAGCT ACACGCACGC GGCGCAGCAT CACGGCACGC TCGACTTCCT GATGAGCATC
GTGCCGGGGA GTGTCGTCGG CGCTTTCGCG AACGGCGAGA TACTGCCGAT CATTTTCTTC
TCGGTCATCT TCGCGGTCGC GCTCGCGAAA CTCGGCCCGA GGACCGCGCC GCTCGTGGAC
ATGCTGGACA TGTTCCTGCA AGGGATGTTC GGAGTCGTGC GCATCGTGAT GCATGTGGCG
CCCGCCGGTG CATTCGGCGG GATGGCGTTC ACCATCGCCA GATACGGGAT CGGCACGCTC
GCGCAGTTCG GACAACTGAT GCTGTGCCTG TACCTCACGT CGATCCTGTT CGTCGTCGTG
GCGCTCGGCC TCGTCATGCG CGTGTGCGGG TTGTCGCTGT GGCAATACCT GCGTTATATC
CGCGACGAGA TCCTGATCAC GCTCGGCACG GCATCGACGG AAGCCGTGCT GCCGCAGATG
CTGCTCAAGA TGGAGCGAAT GGGTTGCTCG CGTCCGGTCG TCGGGATGGT GCTGCCCACC
GGCTATACCT TCAATGCCGA CGGCACCGCG ATCTACCTGA CGATGGCGTC GCTGTTCATC
GCACAGGCAT TCAACATCCA TCTGTCGATC TGGGACCAGC TTCTGCTGCT CGGCGTGCTG
CTGCTGACGT CGAAGGGCTC GGCGGGCGTC GCGGGCGCGG GTTTCGTCGC GCTGGCCGCA
ACCTTGTCGA CCATGCATCA GGTGCCCGTA TCGGGCCTGG TCCTGCTGCT CGGCGTCGAT
CGCTTCCTGA ACGAGGCGCG CGCCGTCACG AACCTGATCG GCAATGGCGT GGCAACGGTC
GTGGTGGCCC GTTGGGAAGG GGCGCTGGAC CTCGACAAGG CCCGGGCCGT TCTCGATCGT
CGCGCCGGGG CGGAGTCGAT CGTCGTGGAC GCGCGCGACG CGGGACCGCC GGCGCCGCAG
CGGCACACGC AGGCGAGCGC GCCGGGCATG CAATCGAATG TGCGCTAG
|
|---|
| Protein sequence | MLASRIRRTL SKLYVQVLIG IVAGILVGHF YPDIGAQLKP LGDLFIKLIR MLLAPIIFAS
VVVGIARMTD LHEAGRVGVK AVLYFEAAST VALVVGMAVV NLVRPGSGMN VDPAKIDGAA
IASYTHAAQH HGTLDFLMSI VPGSVVGAFA NGEILPIIFF SVIFAVALAK LGPRTAPLVD
MLDMFLQGMF GVVRIVMHVA PAGAFGGMAF TIARYGIGTL AQFGQLMLCL YLTSILFVVV
ALGLVMRVCG LSLWQYLRYI RDEILITLGT ASTEAVLPQM LLKMERMGCS RPVVGMVLPT
GYTFNADGTA IYLTMASLFI AQAFNIHLSI WDQLLLLGVL LLTSKGSAGV AGAGFVALAA
TLSTMHQVPV SGLVLLLGVD RFLNEARAVT NLIGNGVATV VVARWEGALD LDKARAVLDR
RAGAESIVVD ARDAGPPAPQ RHTQASAPGM QSNVR
|
|---|
| |