| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3531 |
|---|
| Symbol | |
|---|
| ID | 6179684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 460986 |
|---|
| End bp | 461960 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641683300 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001810214 |
|---|
| Protein GI | 172062563 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.342116 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATCG CCCTCTCCCG ACATGCGCCG AACCGGCTCG GCACGCTGCA TGCGCCCGAC
GAAGTCGAAC GCGCGGTCGC GCACCGGCTC GGGCCGCACC GGATGGCCGC GCACGGCCGC
GATCCCTTTC ATGCGGAGCT GTACGAGGTG CCGCTGCATC ACGGCGCGCT GCTCGAGCTC
TGCTACGGCC GCGAAACGCG CATCGATTTC GGTGACGATG CCGATCACTT CCTGTTCCGG
CTGACGCTGT CTGGCGCGTG CGAACTGCGG GCCGGCCAGC GGGTCGCGCG AGCGTGCCCG
GGCGAGCTGA CCGTGTCGTC GCCGGCGCTC GCGAGCCGCC TGAGCACGAG CCCCGATTGC
CGCAATCTGG TACTGCGGCT CGAGCGCGGC GCACTCGAAC GCAAGCTGCA GGACATGCTG
CATGCGACGC TCACGCGGCC GCTGCACTTC GACCTCGCCG CGGGCGGCAG CGGCGCGGGC
GCCGCGCTCG TGCCGCCGAC GTTCGAGTAC CTGTGCCGGC TCGGCGCGCA GCCGGGCATT
GGCACATCGG CGACGACGTT CGGCGCCGAT CTCACTGCGT GGCTGATGTC GCTGCTCCTC
ACGCACCTGC CGCATTCGTA CAGCGCTGCG CTCGCGCGCG GCACGCCGCC GCTGCCGGCG
CACGTGCGCC GCGCATGCGA CCACGTCGAC GCGAATCTGG GCGAACCGCT CGCGCTCGCC
GCGCTCGCGG CCGTCGCGGG CGTCGCGCCG CGCACGCTGC AGCATGCGTT TCGCGCGTTC
CTGAACACCA CGCCGGCCGC CTACGTGCGC GAGCGCCGGC TGGCCGCGGT GCACGCCGCG
CTGCAACGCG GCGACGCGCG CAGCGTGACC GACGTGCTGA TCGCGCACGG CATTCATGGC
TTCGGCCATT TCGCGAAGGC CTATGCGCGG CGTTACGGCC ACGCGCCTTC CGTCACCGCG
AGGCAAGCAC CATGA
|
|---|
| Protein sequence | MDIALSRHAP NRLGTLHAPD EVERAVAHRL GPHRMAAHGR DPFHAELYEV PLHHGALLEL
CYGRETRIDF GDDADHFLFR LTLSGACELR AGQRVARACP GELTVSSPAL ASRLSTSPDC
RNLVLRLERG ALERKLQDML HATLTRPLHF DLAAGGSGAG AALVPPTFEY LCRLGAQPGI
GTSATTFGAD LTAWLMSLLL THLPHSYSAA LARGTPPLPA HVRRACDHVD ANLGEPLALA
ALAAVAGVAP RTLQHAFRAF LNTTPAAYVR ERRLAAVHAA LQRGDARSVT DVLIAHGIHG
FGHFAKAYAR RYGHAPSVTA RQAP
|
|---|
| |