Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3529 |
Symbol | |
ID | 6179118 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 458789 |
End bp | 459919 |
Gene Length | 1131 bp |
Protein Length | 376 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641683298 |
Product | porin |
Protein accession | YP_001810212 |
Protein GI | 172062561 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.327335 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCATC CGAACGGGCG GGCCGACCGG CTTGCCGTAC CGCGTGCCGC GCTGGTTGCC GCGCTTCTCA CGTGCGCGTC GCTGCCGGCG CTCGCGCAAT CGAGCGTGAC GCTCTACGGC CGCGTCGACA CCGCGATCGA ATACGCGAAC GCCGGGCCGA ATCATGTGAC GCGCGTGGGC AGCGGCAACC TGTGGGCGTC GCAGTGGGGG TTGAAGGGCG TCGAGGATCT CGGTGGCGGT TACGCGGCGA TCTTCAAGCT CGAGGACGGC TTCAACGCGG CGAGCGGCGC GCTGTCGAAC AGCAGCGCGC TGTTCGGCCG CGAGGCGTGG GTCGGCATCA CCGGGCCGTT CGGCGGCGTG CAGTTCGGCG AGCTCTACAC GATCCTGCAC ACCACGCTCG TCACGTACAG CCTGCCCGGT CTCGGCGCGG GCCTCGCGTG GGGCAACGCG ACGAACAACT TCGTCGGGCC CGCGTTCCTG CGCGTGCGCA ACTCGATGCG CTACACGTCG CCGCGCTACG CCGGCTTCAT GCTCCGCGCG ATGGCCGCGC GCGGCGCCAA TGGCGCGGCC GGCCAGCCGG CGACGCTCGG CGACACGTAC GGCGCGGGCC TCAACTACGC GCGCGGCGGG TTGTCGATCG ACGTCGACTA CATGCAGCAG AAGTTCAGCC CGGTCGCCGC ATCCGCGCTC GGTGCCACGA GCCCGGCCGC GAACGGCAAC TACACGCTCG GCGCGATCTC GTACGACTTC AGCGTCGTGA AGATCGCCGC GTTGTACATG CGCCATCGCG GCGGCCCCGA CGTCGCGGCC GCGATCGACA GCCAGAGTGC GTATCCGCAC AGCGACACGA TGGAGCTCAG CGCGACGGTG CCGATCGGCC GCGCGTCGCT GCTGTTGAGC ATCGGCCACT ACCGGAAGGT CGCGGACAGC GACGGCAACG CCGATTCGTA CGGCATCCGC TTCGACTATC CGCTGTCGAA GCGCACGGTG CTTTACACGG GCGCGGCGAT GGTGCGCAAC GGCGCGCATG CGCGCTTCGT CGTGAACGGC GCGGCGGGCG GCGGCGTCGC GGTCGCGAAA CCCGGCGCGA CCGCCAGCTC GATCGTCGCG GGCATCCTCA CGTCGTTCTG A
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Protein sequence | MNHPNGRADR LAVPRAALVA ALLTCASLPA LAQSSVTLYG RVDTAIEYAN AGPNHVTRVG SGNLWASQWG LKGVEDLGGG YAAIFKLEDG FNAASGALSN SSALFGREAW VGITGPFGGV QFGELYTILH TTLVTYSLPG LGAGLAWGNA TNNFVGPAFL RVRNSMRYTS PRYAGFMLRA MAARGANGAA GQPATLGDTY GAGLNYARGG LSIDVDYMQQ KFSPVAASAL GATSPAANGN YTLGAISYDF SVVKIAALYM RHRGGPDVAA AIDSQSAYPH SDTMELSATV PIGRASLLLS IGHYRKVADS DGNADSYGIR FDYPLSKRTV LYTGAAMVRN GAHARFVVNG AAGGGVAVAK PGATASSIVA GILTSF
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