| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3526 |
|---|
| Symbol | |
|---|
| ID | 6179226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 454798 |
|---|
| End bp | 455718 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641683295 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001810209 |
|---|
| Protein GI | 172062558 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0893193 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCGG TCGATCATCT CGATCTGAAC CTGTTGCGGG TGTTTCAGGC GATCGTCGAG
GAGCGCAGCC TGACCAAGGC CGGCGAGCGG CTCGCGCTGT CGCAGCCGGC CGTCAGCTAT
TCGCTCGGGC GGCTGCGCAC GCTGTTCGAC GATCCGCTGT TCGTGCGCAC GCGCTCGGGG
ATGCAGCCCA CGCCGGTCGC GCTCGAACTC GCGGGGATCG TCGGCAAGGC GCTCGACATG
GTGCGGGCCG CGCTGCGCTA TGCGGAGCGT TTCGATCCGG CGTCGAGCAC GCGTACGTTC
CGGCTGTCGC TGTCGGACGC GGGCGAGATG GCGTACCTGC CGGCGATCTG CCAGGCGCTG
CGCGAGCGCG CGCCGCGCGT GACGCTGAGC GTGCAGCCGC TGCCCGTGGA GGAGATCGAG
GAGGCGCTGC GCGCGAGCCG GCTGGACTTC GCGATCGGCA ACCTGCCGGA GCTGATGCCG
CGCACGCGCC ACCAGGTGCT GTTCGAGGAA ACCTACGTGT GCATGACGGG CCGCCGGCGC
GGGTTGCCGG CCGGCGCGGC GCTGAGCCTC GAGCAGTTCG TGCGCGCCGC GCATGTCAAC
GTGAAATCGG TCGAGCACAG CCACCACGCG CTCGACGACG CATTGCGCGC GAAGGGCGTG
GGCCGCAACA TCGCGCTCGA AGTGCCGCAC TTCGTCGCGC TGCCGAGCGT GCTGTCGGTC
ACCGATCTCT ATGCGACGCT GCCGAGGCGG CTCGCGCAGA TCCTGAACCG CGGCAACGCG
TTCCGGCTGT ACGACCTGCC GGTGACGCTG CCGCCCGCGC CGGTCACGAT GCACTGGCAC
GAGCACTTTC ACGAGGACGA GGGCATCGCG TGGATGCGCG CGCTGCTCGC CGAGATCGTC
GAGCATTTCG ACGAGGCGTG A
|
|---|
| Protein sequence | MTSVDHLDLN LLRVFQAIVE ERSLTKAGER LALSQPAVSY SLGRLRTLFD DPLFVRTRSG
MQPTPVALEL AGIVGKALDM VRAALRYAER FDPASSTRTF RLSLSDAGEM AYLPAICQAL
RERAPRVTLS VQPLPVEEIE EALRASRLDF AIGNLPELMP RTRHQVLFEE TYVCMTGRRR
GLPAGAALSL EQFVRAAHVN VKSVEHSHHA LDDALRAKGV GRNIALEVPH FVALPSVLSV
TDLYATLPRR LAQILNRGNA FRLYDLPVTL PPAPVTMHWH EHFHEDEGIA WMRALLAEIV
EHFDEA
|
|---|
| |