| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3514 |
|---|
| Symbol | |
|---|
| ID | 6181243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 443342 |
|---|
| End bp | 444589 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641683283 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001810197 |
|---|
| Protein GI | 172062546 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.747582 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0415191 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCAG CACCGCAACC GGAGCACGCC GGCCGAGCAC GGCCGGATGC GAGCGCCACC
GAGCCCGACC GCATGGCCGC ATGGCGGCTC GCGATCTGCC TGTCGCTCGG CAGCGCGATC
GCGCTCGGCC TCGCACGCTT CTCGTATGCA CTGCTGTTGC CGCCGATGAA GGCCGATCTC
GGCTGGACCT TCGCGCAGGC CGGCGCGCTG AACACGGCGA ATGCGGCCGG CTACCTGATC
GGCGCGCTCG TTTTCCCGTT CCTGTCGCGG CGCTGGCGCA CGGGCACGCT GCTCACGGCC
GGCTGCGCGC TGACCGCGCT GCTGATGGCC GCATGCGGGC TCACGTCCGG CATGAACGTG
CTGCTCGTCG AGCGGCTCGC GACGGGCGTC GGCAGCGCGC TGATCTTCAT CAGCGGCGGC
GTGCTGGCGG CGCGGCTTGC GTCCGCTGCG CCGCGCGATG CGGGGCTCCT GCTCGGGCTC
TATTACGGCG GCACGGGGTG GGGCATCGTC GCGTCGTCGC TGCTCGTGCC GGCGACGCTC
GTGCCTCGCG CGCATGGCTG GCAACCCGCA TGGTTCGCGC TCGCATTCGC GTGCGTGCTG
TTCTCCGCCG CAGCCGTGTC GGCGGCACGC CGCATCGAGC GCGCGCACGC GGCACCGGCC
GTGCCGCGCG ACGGCACCGC GCCGGCCGCC ACCGCGCATC CCGCGCGCTT CGCCCTCGCG
CTCGCGGGCT ACGCACTGTT CGGCGTCGGC TATATCGGCT ACATGACGTT CATCGTCGCG
CTGCTGCGTG GCGCGGGGAT GAGCGGGACG GTCGTGTCCG CGTTCTACGT GACGCTCGGC
GTCGCGACCG TCGTGTCGGC GCGGCTGTGG TCGGGGCTGC TCGACCGGAT GCGCGGCGGC
CAGGCGCTGG CCGTGCTCAA CGCGCTGCTC GGCGTCGCGA CGCTGATGCC GGCGCTGTTC
GTGCATCCGG CGGCCGCGTT CGCGTCGGGC GTGCTGTTCG GCGCGACGTT CCTGTCGGCG
GTCGCGGCGA CCACCGCGTT CGTGCGTCAC AACCTGCCGC CGGAAGGCTG GGCGAAAGGC
ATCAGCGCGT TCACGACGGT CTTCGCGTTC GGGCAGATCG CCGGCCCCGT CGCGATCGGC
TGGGTGTCGG ACAGCGCGGG GCTCGCGCGC GGGCTCGTGT ATTCGGCGCT GACGCTGTTC
GCAGGTGCGG CGCTCGCGGC CGGACAGCGC GCGCTGCGGG CGTCCTAG
|
|---|
| Protein sequence | MRAAPQPEHA GRARPDASAT EPDRMAAWRL AICLSLGSAI ALGLARFSYA LLLPPMKADL
GWTFAQAGAL NTANAAGYLI GALVFPFLSR RWRTGTLLTA GCALTALLMA ACGLTSGMNV
LLVERLATGV GSALIFISGG VLAARLASAA PRDAGLLLGL YYGGTGWGIV ASSLLVPATL
VPRAHGWQPA WFALAFACVL FSAAAVSAAR RIERAHAAPA VPRDGTAPAA TAHPARFALA
LAGYALFGVG YIGYMTFIVA LLRGAGMSGT VVSAFYVTLG VATVVSARLW SGLLDRMRGG
QALAVLNALL GVATLMPALF VHPAAAFASG VLFGATFLSA VAATTAFVRH NLPPEGWAKG
ISAFTTVFAF GQIAGPVAIG WVSDSAGLAR GLVYSALTLF AGAALAAGQR ALRAS
|
|---|
| |