| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3501 |
|---|
| Symbol | |
|---|
| ID | 6180574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 431113 |
|---|
| End bp | 433131 |
|---|
| Gene Length | 2019 bp |
|---|
| Protein Length | 672 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641683270 |
|---|
| Product | DedA family membrane protein |
|---|
| Protein accession | YP_001810184 |
|---|
| Protein GI | 172062533 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0586] Uncharacterized membrane-associated protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0300275 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACA CGATCCACGC ATGGCTGGGC GCGATCGGCG CGCATCCGCT ACTCGTGCTG
GCGATCGTGT TCGCGACCGC CTGCGCCGAG GCGATCGCGC TCATCGGTAC GGTCGTGCCG
GCCGGCGCGG TGATGTTCGC GGCCGGCACG CTGATCGGCG CGGGCGCGCT CGACGGCGTG
ACGACGATCG GCGTCGCGGC CGCCGGCGCG ATCGTCGGCG ACGGCATCAG CTATGAGATC
GGCCGCCGCT ATGGCGGCGC GATTCGCAAC GGCTGGGTGC GGCTGGGCTA CGCGGACGCC
TATGCGCGCG GCGAGCAGTT CGTGCTGCGC CACGGGATGA AGAGCATCGT GCTCGCGCGC
TTCCTGGCAC CGGTGCGCGC GGTCGTGCCG GTCGTGGTCG GCTGCGCGAC GCTGCCGCGC
CGGTCGTTCT ATCCGGTCAA CGTCGTGTCG GCGCTGATCT GGGCACCCGT GCACGTCGCG
CCGGGCATCG TGTTCGGCGC GTCGGCGGCG CTGGCCGCGG CGATCAGCGT GCGGGTCGCC
GCGATCCTGC TGGTGGTCGC CGGGCTGGTC GCGGTCGTGT GGGTCGGCGT GCGCGTCGCG
CTGCGGCGCG GCTGGCCGTT GCTGTGCCAG GCGACCGGCG CGGCCGTGCA TGCATCCGCG
CGCCACTGGC CGCGCTTCGG CGCGTGGCTG CACGACGCGA TCGGCAAGGT GCGCCGCCTG
CCGGGCGCGG TGCCCGTGTT CGCGCTGCTG TTCCTCGGCT GCGTGTGGCT GTTCGCCGGC
ATCGTGCAGG ACGTCGTCGC GAACGATCCG CTGACGCACG CGGACATCGC GCTGTATGCG
TTCCTGCAGA ACCTGCGCAC GCCGCCCGTG GACGCCACGA TGCGCGCGCT CGCGGTGCTG
CACGGACACG ATACGGGGCT GATCGTCGCG GCCGCGTTTC TCGTCTGGCT GATGATCCAT
CGCTGCTGGG TGACGTCCGC CTGGTGGCTC GCGACGCTCG GCATCGCGGT CGTGCTCGTG
CCGGCGTTCG GCGCCGGCGT GCCCGGCATG TCGCCCGCGA GCCTGCCGCC CGGCGCGCTG
CACGTGGCGC TGCCCGACGC CGACGCGGCG TTCGCGATGC TCGCGAGCAG CGGCATCGGC
TGGGTGCTGA CGCGCGAGCG GCCCGCGTCG TGGCGGATCC CGGTCGTGAC GGCGGTCGTG
CTGTGGATCG TGCTCGGCGG CTTCGCGCGG CTCTATGTCG GCGATACGTG GCTGTCGGGC
CTGCTCGGCG GCTGGTGCCT CGGGCTCGCA TGGTTCGCGG TGCTGGCGGG CGCCCATGCG
TACTGGCGCG TGCACGAGCA CGTGCAGCCG CGCGGCGCGC TCGTCGCGGT GCTCGTCGTG
CTCGCCACCG CCGGCGTGTG GACCGTGCCC GCGCAGTGGC AGCTCGATCG CGCGGCGCGT
CCGCATGTCG GCGACGTCGT CGCGATGACC GTCGACCAGT GGATGCGCGG CGGCTGGCAG
CGCGTGCCGA CGCGGCGCAC CGAGATCGGC GGCGATCGCG AGGAATATCT GCCGCTGCAA
TGGTGCGCGA CGTCGGACAC GCTCGACCGC CATCTTTCGC TGGCCGGCTG GCAGCGCGCG
ACGCCGTGGT CGCCCGCGAC CGCGCTGCGC TGGCTGTCGC CGCAGGCGCC GGCCGATACG
CTGCCCGTGC TGCCGCGCTA CACGCACGGC GAGAGCACGC GCCGGGTGTT CGTGCGTGTC
GACGCGGCCC ATCCGGACAG CCGCCTCGTG CTGCGGCTAT GGCGTTATCC GTACGTGCTG
CAGGATGCGC TCGGCATGCG GCCGCTGTGG TACGGCGCGC TGTATCGCGA GACGCTGCAT
CGGCCCGCGC GGGTGATGGC GGTCGTGCGC ACGACGCCGC TCGACGATGC GGCGACGATC
GCGCAGGCGC TGAAGGTCGA GCCGACGATC GAGCGGCCGC CGGCGGGGAC GAGCGCGGCG
CCGCCCGCGA TGGCGCTCGT GTGGATGGTG CAGCCGTGA
|
|---|
| Protein sequence | MSDTIHAWLG AIGAHPLLVL AIVFATACAE AIALIGTVVP AGAVMFAAGT LIGAGALDGV
TTIGVAAAGA IVGDGISYEI GRRYGGAIRN GWVRLGYADA YARGEQFVLR HGMKSIVLAR
FLAPVRAVVP VVVGCATLPR RSFYPVNVVS ALIWAPVHVA PGIVFGASAA LAAAISVRVA
AILLVVAGLV AVVWVGVRVA LRRGWPLLCQ ATGAAVHASA RHWPRFGAWL HDAIGKVRRL
PGAVPVFALL FLGCVWLFAG IVQDVVANDP LTHADIALYA FLQNLRTPPV DATMRALAVL
HGHDTGLIVA AAFLVWLMIH RCWVTSAWWL ATLGIAVVLV PAFGAGVPGM SPASLPPGAL
HVALPDADAA FAMLASSGIG WVLTRERPAS WRIPVVTAVV LWIVLGGFAR LYVGDTWLSG
LLGGWCLGLA WFAVLAGAHA YWRVHEHVQP RGALVAVLVV LATAGVWTVP AQWQLDRAAR
PHVGDVVAMT VDQWMRGGWQ RVPTRRTEIG GDREEYLPLQ WCATSDTLDR HLSLAGWQRA
TPWSPATALR WLSPQAPADT LPVLPRYTHG ESTRRVFVRV DAAHPDSRLV LRLWRYPYVL
QDALGMRPLW YGALYRETLH RPARVMAVVR TTPLDDAATI AQALKVEPTI ERPPAGTSAA
PPAMALVWMV QP
|
|---|
| |