| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3498 |
|---|
| Symbol | |
|---|
| ID | 6180213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 427817 |
|---|
| End bp | 429607 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641683267 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001810181 |
|---|
| Protein GI | 172062530 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.00492042 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGCCCG CATTCCGCTC GCGCGCCGCG GCCACCGACG ACGACGACGA CGCGCCGGAT
CCGTCGCACC TGTTCATGTC GTCGCTGCCG CCGGGCCGAC AGGAGCGGCG GCTCGCGATC
GCGATGGTGA TCGTGTCGGC CGTGATCTTC GTCGCGCTCG CACCGTTCGC GGGCGTGCCG
CTGGCTCGCG TGTGGGGCTT CATTCCCGTG TACCAGTCGG CGATCGTCGT CAACGACATG
GTGACGGCCG GCCTGCTGCT CGGCCAGTTC GCGATCCTGC GCGAGAAATC GCTGCTCGTG
CTCGCCGCCG GCTACCTGTT CACGGGGTTC ATGGCCGGCA CGCACATGCT GACCTTTCCG
GGGCTGTTCA CGCCGACGGG CCTGCTCGGC GCGGGCGAGC AGACCACCGC GTGGCTTTAT
CTGTTCTGGC ACGGCGGCTT TCCGCTGGCG GTCGCCGCGT ACGTGCTGCT GCGCGCGACG
CCGCGCGCCC GCCCGCCGTC GCTCGAGCGG CGCCGCGCGA GGCTTCCGGT GCTGCTCTGC
ATCGTCCTGA CGGCCGCCGC GACCGGCGCG CTCGCGCTGC TCGCGACCGC CGGCCACGAC
CTGCTGCCGC GCATCATGCA GGGCAACCGG ATGGCCGCGA CGATGACGAC CGCGATCGCG
GTCGTCTGGG CGTTGAACCT GGCAGCGCTC GTGCTGATGT GGCGGCAGCG GCGGCGCCAT
TCCGTGCTCG ACCTGTGGGT GATGATCGTG CTCGTCGCGT GGCTGTTCGA CATCGCGTTG
TCGTCGATGC TGAACCACGG GCGCTTCGAC CTGGGCTTCT ACGCGGGGCG GACCTACGGC
CTCGTCGCGT CGGGCGTCGT GCTGTTCGCG CTGCTGTTCG AGAACGGCCG GCTGCATGCG
CAGACGGTGC GTGCGCTCGC CGGCGCGCGC TATCAGCACC TGCTCGTTGT GCAGAAGAGC
GCGCAGCTCA ACGACGCGAA CGAACGGCTC GAGCAGCGCG TCGCGGCCCG CACCGCGCAG
TTGAGCGCGT CGAACCGCGA CTTGCGGCGC GAAGTCGAGG AGCGTGTGCG CGCGGAGCGG
GCGCTGCAGG CGTCACGCGA GGAGCTGCGC GAGATCGCGG CGATCAGCGC GAGCGCGCGC
GAGGCCGAGC AACGCCGCAT CGCGCGCGAA CTGCACGACG AACTCGCGCA GACGCTCGCG
ACGCTGAAGA ACGATCTCGA ATGGCTGCTC GATCACGTGC CGCAGGACGA TGCGCCGCTG
GCGCGCAAGA TCGCGGCGAT GCATGCGCTC GCGCGCGGCG CGGTAACGGC CACGCGACGC
ATTGCATCCG ACCTGCGCCC GCTGATGCTC GACGACCTCG GGTTCGCGGC CGCGATGCAA
TGGCTCGTGG AGGATTTCCG GCACCGTCAC GGCATGGCGT GCACGCTGCG CGTCGAGCCG
AGCGAGCTGC AGCTCGACGA ACCGTATGCG ACGGCCGTGT TCCGCATCGC GCAGGAAGCG
CTCGCGAACG TCGGGCGGCA CGCGGCCGCG TCGAGCGCGA CCGTGGAACT CGTGTACCGG
AACGAGACGA TTGCTCTGAC GATTCGCGAC GACGGTGCGG GCTTCGATCC CGGTGCGCCG
CGCAAATCGG GATCGTTCGG GCTGGTCGGC CTGCGCGAGC GCGCGTATCT CGTCGGCGGC
ACGCTGCGGA TCGACACGAC GCTGGGCGTT GGGACGACGG TGGAAGTGGA TATTCCGGTG
GCGTCCGCGC ATGTGGCGAT CGCGCATGAT GGACGGGGGG CGTCGCACTA A
|
|---|
| Protein sequence | MMPAFRSRAA ATDDDDDAPD PSHLFMSSLP PGRQERRLAI AMVIVSAVIF VALAPFAGVP
LARVWGFIPV YQSAIVVNDM VTAGLLLGQF AILREKSLLV LAAGYLFTGF MAGTHMLTFP
GLFTPTGLLG AGEQTTAWLY LFWHGGFPLA VAAYVLLRAT PRARPPSLER RRARLPVLLC
IVLTAAATGA LALLATAGHD LLPRIMQGNR MAATMTTAIA VVWALNLAAL VLMWRQRRRH
SVLDLWVMIV LVAWLFDIAL SSMLNHGRFD LGFYAGRTYG LVASGVVLFA LLFENGRLHA
QTVRALAGAR YQHLLVVQKS AQLNDANERL EQRVAARTAQ LSASNRDLRR EVEERVRAER
ALQASREELR EIAAISASAR EAEQRRIARE LHDELAQTLA TLKNDLEWLL DHVPQDDAPL
ARKIAAMHAL ARGAVTATRR IASDLRPLML DDLGFAAAMQ WLVEDFRHRH GMACTLRVEP
SELQLDEPYA TAVFRIAQEA LANVGRHAAA SSATVELVYR NETIALTIRD DGAGFDPGAP
RKSGSFGLVG LRERAYLVGG TLRIDTTLGV GTTVEVDIPV ASAHVAIAHD GRGASH
|
|---|
| |