Gene BamMC406_3484 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3484 
Symbol 
ID6179402 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp410731 
End bp411861 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content67% 
IMG OID641683253 
Productalanine racemase domain-containing protein 
Protein accessionYP_001810167 
Protein GI172062516 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3616] Predicted amino acid aldolase or racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.230259 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0513878 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCATCC CACCCCTGAA CACCCCCGCC GCATTGATCG ACGTCGATCG CATGCGCAAC 
AACATCGCGC GCATGCAGGC GCATCTCGAC GCGCTGGGCG TCAAGTTCCG GCCGCACGTG
AAGACCACCA AATGCCAGCA GGTCGTCGAC GCGCAGATCG CGGCCGGCGC GCAGGGCATC
ACGGTGTCGA CGCTGAAGGA AGCCGAACAG TTCTTCGCGG CCGGCGTGCG CGACATCGTC
TATGCAGTCG GGATGATTCC GGCCAAGCTG GGTCAGGCAC TGGCGCTGCG CCGCCAGGGC
TGCGACCTGA AGATCGTCGC CGACAGCCTG CAAACCGCGA ACTCGATCGC CGAATTCGGG
CGCGAGCACG GCGAGCGCTT CGACGTGTGG ATCGAAGTCG ACGTCGACGG CCACCGTTCG
GGGATTCGGC CCGACGACGG TCTGCTGATC GACGTCGGCC GCGCGCTGGT CGACGGCGGC
ATGGCGCTCG GCGGCGTGCT TGCTCACGCC GGTTCCAGTT ATGAATACGA CACACACGAC
GCGCTGGTCG CGATCGCCGA ACAGGAGCGC GGCCGCACCG TGCACGCCGC CGAGCGCCTC
AGGGCGGCCG GCCTGCCCTG CCCGGTGGTG AGCATCGGTT CGACGCCGAC CGCGCTGTCC
GCGACGAACC TCGACGGAGT GACGGAAGTC CGTGCAGGCG TCTACGTGCT GTTCGACCTC
GTGATGCACA ACATCGGCGT GTGCGCGCTG GCCGACATCG CGCTGTCGGT GCTGACCACC
GTCATCGGAC ACCAGGAAGA AAAAGGCTGG GCCATCGTCG ACGCGGGCTG GATGGCGATG
AGCCGCGATC GCGGCACCCA GCGGCAGGCG CGGGATTTCG GCTACGGACA GGTGTGTACC
GAAGACGGCG ACGTGCTCGG CGAGTACGTG ATGAGTTCGG CCAATCAGGA GCACGGCATC
GTGTCGCGCA TCGATACGCC CGACACGCGC GTCGCGCAGC GGTTTCCTAT CGGCACGCGT
TTGCGGATCC TGCCCAATCA CGCATGCGCG ACCGGTGCGC AACATCCGGA ATACCACGCG
CTGAGCAGCG ACGGCACGGT CGAGACGTGG CCGCGCTTCT ACGGGTGGTG A
 
Protein sequence
MGIPPLNTPA ALIDVDRMRN NIARMQAHLD ALGVKFRPHV KTTKCQQVVD AQIAAGAQGI 
TVSTLKEAEQ FFAAGVRDIV YAVGMIPAKL GQALALRRQG CDLKIVADSL QTANSIAEFG
REHGERFDVW IEVDVDGHRS GIRPDDGLLI DVGRALVDGG MALGGVLAHA GSSYEYDTHD
ALVAIAEQER GRTVHAAERL RAAGLPCPVV SIGSTPTALS ATNLDGVTEV RAGVYVLFDL
VMHNIGVCAL ADIALSVLTT VIGHQEEKGW AIVDAGWMAM SRDRGTQRQA RDFGYGQVCT
EDGDVLGEYV MSSANQEHGI VSRIDTPDTR VAQRFPIGTR LRILPNHACA TGAQHPEYHA
LSSDGTVETW PRFYGW