| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3461 |
|---|
| Symbol | |
|---|
| ID | 6179271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 381037 |
|---|
| End bp | 384675 |
|---|
| Gene Length | 3639 bp |
|---|
| Protein Length | 1212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641683230 |
|---|
| Product | 5-oxoprolinase (ATP-hydrolyzing) |
|---|
| Protein accession | YP_001810144 |
|---|
| Protein GI | 172062493 |
|---|
| COG category | [E] Amino acid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0145] N-methylhydantoinase A/acetone carboxylase, beta subunit
[COG0146] N-methylhydantoinase B/acetone carboxylase, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.397296 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACC GACACACTTT CCCCGTTTCC TCCGACGCCG CGCGCTGGCA ATTCTGGATC
GACCGCGGCG GCACCTTCAC CGACATCGTC GCGCGCCGGC CTGACGGCTC GCTCGTCACG
CACAAGCTGC TGTCGGAGAA TCCCGAGCAG TATCGCGATG CGGCCGTGGC CGGCATCCGC
CACCTGCTCG GCCTGGCCGA CGGCGAGCCG ATCACGCCCG AACGCGTCGA CATGGTGAAG
ATGGGCACGA CGGTCGCGAC CAACGCGCTG CTCGAACGCA AGGGCGAACG CACCGCGCTC
GCGACGACGC ACGGCTTTCG CGACGTGCTG CGCATCGCGT ACCAGAACCG GCCGCGCCTG
TTCGATCTCG ACATCGTGCT GCCCGATGCG CTGTACGAGA CCGTCGTCGA GGTCGACGAG
CGGATCGGCG CGCACGGCGA AGTCGTCGTG CCGCTCGACG TGCAAGGCGC GGAAACCGAG
CTGCGCCGCG TGTTCGACTC GGGCGTGCAG GCGCTGGCCA TCGTGCTGAT CCACGGCTAT
CGCTATACCG GGCACGAGCG CGCGCTGGCC GAACTCGCAC GCCGGATCGG TTTCACGCAG
GTGTCCGTGT CGCACGAGGT GTCGCCGCTG ATGAAGATGG TGTCGCGCGG CGACACGACC
GTGGTCGACG CGTACCTGTC GCCGATCCTG CGCCGCTACG TCGAGCAGGT CGCGCACGAG
ATGCCCGGCG TGAACCTGCA GTTCATGCAG AGCAGTGGCG GCCTGACGCG CGCCGATGCG
TTCCAGGGCA AGGACGCGAT CCTGTCCGGC CCGGCCGGTG GCATCGTCGG GATGGTGCGC
GCCGCGCGCG CGGCCGGCTT CGACCGCGTG ATCGGCTTCG ACATGGGCGG CACGTCGACC
GACGTGTCGC ACTACAACGG CGAATTCGAG CGTGTGTTCG AGACGCAGGT GGCCGGCGTG
CGGATGCGCG CGCCGATGAT GAGCATCCAC ACGGTCGCGG CCGGCGGCGG CTCGGTGCTC
GGCTTCGACG GCGCGCGGCT GCGCGTCGGG CCCGAATCGG CTGGCGCGAA CCCGGGGCCG
GCCGCGTACC GGCGCGGCGG CCCGCTGACC GTGACCGACT GCAACGTGAT GCTCGGCAAG
ATCCAGCCCG ATCATTTCCC GCGCGTGTTC GGCCCGCACG CGGACGAACC GCTCGACCGC
GACGGCGTCG CCGCGAAATT CGCGGCGCTC GCCGACGAGA TCCACGCCGC GACCGGGCGG
CGCGAGACGC CCGAGGCGCT GGCCGAAGGA TTCCTGGAGA TCGCGATCGG CAGCATGGCG
AACGCGATCA AGAAGATCTC GGTGCAGCGC GGCCACGACG TGTCGCGCTA CGTGCTGACG
ACGTTCGGCG GCGCGGGCGG CCAGCACGCG TGCGGCGTGG CCGACGCGCT CGGCATGACG
CAGGTGTTCG CGCATCCGCT CGCGGGCGTG CTGTCCGCCT ACGGGATGGG CCTCGCCGAC
CAGACCGCGA TGCGCGAGCG CGCGGTGGAG GCGGTGCTGT CCGACGCGTC GCTGCCGGCG
CTGAACGCGA CGCTCGACCG GCTGACCGAC GACGCGGTCG GCGCGCTGCT CGAACAGGGC
GTGCCACCGG AACGCATCGC GACCGAGCGG CGTGTGCACC TGCGCTACCA GGGCACCGAT
TCCGCGCTCG ACGTGCCGGC CGGCAGCGTC GCCGCGATGC AACAGGCATT CGAAGCCGCG
TACCGGCAGC GTTACGCGTT CCTGATGCCC GGCACGCCGC TGGTCGCCGA ACTGGCCTCG
GTCGAGGCGA TCGGCCGCTC CGATGCGCCC GTCGAGATCG CACCGCTCGC GCCGCGCAAC
GAGGGCGCGG CGCCGCAGGC CCACAGCGCC GTGCGGTTCC ATTCCGGCGG CCAATGGCAC
GACGCGGCGC TGTACGTGCG CGACACGCTG CTCGCCGGCG ACACGATCGA CGGCCCGGCG
ATCGTCGCGG AGCAGAACGG CACGACCGTC GTCGAACCCG GCTGGCGCGC GCGGATGACC
GCGCAGGGCA ACCTCGTGCT GACGCGCACG ACACCGCTGC CGACGCGCCG CTCGCTCGGC
ACCGACGCCG ATCCGGTGCG GCTCGAGATC TTCAACAACC TGTTCATGTC GATCGCGGAG
CAGATGGGGC TGCGGCTGCA GAACACCGCG TACTCGGTGA ACATCAAGGA GCGCCTCGAC
TTCTCGTGCG CGATCTTCGA CGGCGACGGC AACCTGATCG CGAACGCGCC GCACATGCCC
GTGCATCTGG GATCGATGGG CGAGAGCATC CGCACGGTGA TCGAGCGCAA CCGCGGCCGC
ATGCGCGATG GCGACGTGTT CATGCTGAAC GACCCGTATC ACGGCGGCAC TCACCTGCCC
GACGTCACCG TCATCACGCC GGTGTTCGCG GACGGCTCGG ACACCCCGCT GTTCTACGTC
GGCTCGCGCG GTCATCATGC GGACATCGGC GGCACGACGC CGGGCTCGAT GCCGCCCGAT
TCGACGCACA TCGACGAAGA GGGCGTGCTG ATCGACAACT GGCAGCTCGT GTCGGCCGGC
GTGCTGCGCG ATGCGGACAC GCGCGCGCTG CTCGCGTCGG GCCGCTACCC GGCGCGCAAC
GTCGAGCAGA ACATGGCCGA CCTGCGCGCA CAGGTCGCCG CGAACCAGAA GGGTGTCGAC
GAGTTGCGGC GGATGGTCGC CCAGTTCGGC CGCGACGTCG TGCTCGCGTT CATGGGGCAC
GTGCAGGACA ACGCGGAAGA AGCGGTGCGG CGCGTGATCG GCGCGCTGCA GGACGGCGCT
TATCGCTATC CGCTCGACAA CGGCGCGGAG ATTCGCGTCG CGATCCGCGT GGACCGCGCG
GCACGGCGCG CCGAGATCGA TTTCACCGGT ACCTCCGCGC AGCTCGACAA CAACTTCAAC
GCGCCGAAGG CCGTCTGCAT GGCCGCCGTG CTGTACGTGT TCCGTACGCT GGTCGGCGAC
GACATCCCGT TGAACGCCGG CTGCCTGAAG CCGCTCACCG TGATCGTGCC GGCGCGTTCG
ATGCTGAATC CCGAGTATCC GGCGGCGGTC GTGTCGGGCA ACGTCGAGAC GTCGTCGGCG
GTCACCAACG CGCTGTACGG CGCGCTCGGC TGCGTCGCGT CGAGCCAGGG GACGATGAAT
AACTTCACAT TCGGTAACGC TCGATACCAG TACTACGAGA CGATCGCGGG CGGCAGCGGC
GCGGGTAACG GCTTCGCGGG CGTCGGCGCG GTGCAGACGC ACATGACGAA CTCGCGGCTG
ACCGACCCGG AAGTGCTCGA ATGGCGCTAC CCGGTGCGGG TCGACTCGCA TCGGCTGCGC
GCGGGCTCGG GCGGCGGCGG GCGTTGGCGC GGCGGCGACG GCGCGGTCCG GCGGATCCGC
TTCCTCGAGC CGATGACCGC GTCGATCCTG TCGAACAACC GGATCCATGC GCCGTTCGGC
GCGGCGGGCG GCGACGCCGG TGCGCTCGGC CACAACACGA TCGAGCGGGC CGACGGCACG
GTCGAGACGC TCGCGCATAT CGGCCGCGCG CAGATGGCGC CGGGCGACGT GTTCGTCGTC
GAAACGCCGG GCGGCGGCGG TTACGGCGCG GCGGGCTGA
|
|---|
| Protein sequence | MTDRHTFPVS SDAARWQFWI DRGGTFTDIV ARRPDGSLVT HKLLSENPEQ YRDAAVAGIR
HLLGLADGEP ITPERVDMVK MGTTVATNAL LERKGERTAL ATTHGFRDVL RIAYQNRPRL
FDLDIVLPDA LYETVVEVDE RIGAHGEVVV PLDVQGAETE LRRVFDSGVQ ALAIVLIHGY
RYTGHERALA ELARRIGFTQ VSVSHEVSPL MKMVSRGDTT VVDAYLSPIL RRYVEQVAHE
MPGVNLQFMQ SSGGLTRADA FQGKDAILSG PAGGIVGMVR AARAAGFDRV IGFDMGGTST
DVSHYNGEFE RVFETQVAGV RMRAPMMSIH TVAAGGGSVL GFDGARLRVG PESAGANPGP
AAYRRGGPLT VTDCNVMLGK IQPDHFPRVF GPHADEPLDR DGVAAKFAAL ADEIHAATGR
RETPEALAEG FLEIAIGSMA NAIKKISVQR GHDVSRYVLT TFGGAGGQHA CGVADALGMT
QVFAHPLAGV LSAYGMGLAD QTAMRERAVE AVLSDASLPA LNATLDRLTD DAVGALLEQG
VPPERIATER RVHLRYQGTD SALDVPAGSV AAMQQAFEAA YRQRYAFLMP GTPLVAELAS
VEAIGRSDAP VEIAPLAPRN EGAAPQAHSA VRFHSGGQWH DAALYVRDTL LAGDTIDGPA
IVAEQNGTTV VEPGWRARMT AQGNLVLTRT TPLPTRRSLG TDADPVRLEI FNNLFMSIAE
QMGLRLQNTA YSVNIKERLD FSCAIFDGDG NLIANAPHMP VHLGSMGESI RTVIERNRGR
MRDGDVFMLN DPYHGGTHLP DVTVITPVFA DGSDTPLFYV GSRGHHADIG GTTPGSMPPD
STHIDEEGVL IDNWQLVSAG VLRDADTRAL LASGRYPARN VEQNMADLRA QVAANQKGVD
ELRRMVAQFG RDVVLAFMGH VQDNAEEAVR RVIGALQDGA YRYPLDNGAE IRVAIRVDRA
ARRAEIDFTG TSAQLDNNFN APKAVCMAAV LYVFRTLVGD DIPLNAGCLK PLTVIVPARS
MLNPEYPAAV VSGNVETSSA VTNALYGALG CVASSQGTMN NFTFGNARYQ YYETIAGGSG
AGNGFAGVGA VQTHMTNSRL TDPEVLEWRY PVRVDSHRLR AGSGGGGRWR GGDGAVRRIR
FLEPMTASIL SNNRIHAPFG AAGGDAGALG HNTIERADGT VETLAHIGRA QMAPGDVFVV
ETPGGGGYGA AG
|
|---|
| |