Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3371 |
Symbol | |
ID | 6179214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 286145 |
End bp | 288913 |
Gene Length | 2769 bp |
Protein Length | 922 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641683140 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_001810054 |
Protein GI | 172062403 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGATAG CAAAAACGCT CCGTAATTTT GCGTCTGGTC TGATTGACGG AAACCCGCGG CCAGTCGATC TCCATTTCGG GCGCGCGCAA CGCGCGGTCG GCCATCTGCT GGCGCTCCAT CACGCCGATA TCTCCGAAGG GCTGATGTCC GGAATCGAAG GGCAGCTGAC CTGCGTGTCC GCCCACGACC ATCTGTCGCC TGCGCTGTTT CTCGGCCTGC CCGTGTCGGT TCGTGTGACG ACCGATCGGG GCGGCGTACG CGCGATCAAT GCGATCGTGC GCGAAGTGCG GACCGGCCAA TCCGACGGCG AGCTGACCGT CTATCAATTG CAGGTGTGTG ACACGCTGTC GTTGATGGAG GACCGCACGA ACGCCCGCGT GTTCCGCTCG CGCAGCGTGC CGGAAATCCT CACGACGCTG ATGAACGAAT GGAAACAGCG CAGCTACGCA CTCGCGCGCG CATTCGATTT CGACCTGTCC GGGCTGCAGG CCGATCGCTA TCCGGTGCGC GAGCTCACGC GGCAGGTCAA CGAATCGGAC GCGCGCTTCA TCCGGCGTCT GCTGCGCCGG GAAGGCATCA CGGTCTTCGC GAAGGCGGAG CCGGTCGGAC GCGTGAACGG CATGACCGAC GAGCCGCCGG TTCACACGCT CGTATTTTGC GACGATCCGC ATTGTTTGAA GGAGGCACCG GCCGGTGCGC TGCGCCTTCA CCCTCGCGAT GCGGGCGCTG CGCAGCGCGA CACGGTGACG CTCTTTGCGC ACCGCCAGCG CCTGTCGTCG GGCAAGGTCC GCCGTCCGTC GTGGGACTAC AAGACGGCTC GCATCGACGA TTCCATGGCC GTCACCAGCC TCCATCAGGG TGAATCGGGA AACGATCTGG CACACCTGCT GAGCGACGTC GCGATCGACA TCCCGCATGT CGGCGATTCG TGGAACGACC ACGACCGCAT CACGCGCGAC CGGATACTGG CTCACCAGTT CGAAGCCGAG CGATACGACG GGATCAGCAA CGTGCGCGAT TTGCCGGTTG GCCACTGGTT CACGCTGACG GGCGACCCGG AGCTGGATAT GAAGCCGATC GAGCATCGTC GGTTCGTCGT CACGTCGGTT CGACACGACA TCCACAACAA CTTGCCAACG CAGCTCGCAA GTCGGACGCA GGGACTCTTC GCGGCGAGCC GTAACCTGGC GCAAACCGGT GGGCCGACGC CTGCCGATGT TGCCGAACAA GCGGACACGC GCTACGAGAA CCGCTTCACG TGCGTACGGC GCGGCGTGCC GCTCAAACCC GCCTACGATC CGAAGATCGA TGTGCCGCCG GCTCACCTGC TGACCGGCAC GATCGTCGGC ACGCAGGGCG AGGAAGTGTT TTGCGACAGC GCCGGCCGCG TGCGCGTGCG GATTCATGGT TACGATCCGG CCGATCATAC GCACGCGCAA GGCGCCGGAA CGAACGGCCG GGCCGGTGAC AGCGCACCCA TTCGCGTCGG GGCAAATCTG GCGGGCGGCA ACTTCGGGAC GCTCTTCCTG CCCCGCGTCG GCATGGAAGT CCTGTTGGGA TGTCTTGCAG GCGACCCGGA CCGGCTGGTC ATCATCGGCG TCCTGAGCAA TGGCGCGAAC CCGCCTGCGA CCTTCAGCCA TACCGGCGCG CTTCCCGGCA ACCGTTTCCT TTCCGGCATC AAGACCAAGG AAATCAACGG CAGGCGTTAT AACCAGCTTC GCCTGGACGA CACGCCGTCG CAAATCTCGG CGCAGTTGGC GAGCGAACAT GCGCATACCG AATTGAATCT CGGGTATCTG ACGCAGCCGC GAGAAAACGG ACATGGGGAG GCGCGCGGCG AAGGCGCGGA GCTGCGTACC GATGCCGCCG CCGCGTTGCG CGCCGCCCGC GGCATCCTGC TGTCGACCTA TGCGCGCACA CGGGCCACCG GTGGTCAGCT CGATCGCGAT GAACTGATTC GCCTGCTCGA TCAATGCACC GAACTCTTCA AATCGCTCGG CGATTACGCC GGCCAGCACG GCGGGCAGTC CGCCGACACC AGCGGTCAGG ACAACGTCGC CAGTGCGTTC CGTAACTGGA CGCCCGGCGG TGCACCTTCC GGCGCGGCCG GCGATGCGTG CGCGCTGCTC GCGTTCGGCG CGCAGTCCGG GGCGCTCCAC GTCACGCCCA AAACGCACGT CATCCATGCG GGCGAGAACA TCGATCAGGT CGCGCAGCAA CATGTGCAGG TCACGAGCGG CGAGCGCATC AATCTGCATG CCGGTCGCGG CGTCGCGATG TTTGCGCACG GCGACGGCGT GTCGGCGATC GCGAATCAGG GGAAGGTCAC GCTCCAGTCG CAGAACGACG ATACGCGCGT CGAGTCGGCG AAGAACATTC AATTGACCGC GGCGGGCGGA AAGCTCGTTG GCACCGCGAG CGATGAAGTC GTGCTCGTTA CGTCCGGTGG CGCGTATCTC AGGCTGCGCG GCGGCGATAT CGAGCTGGGT TGCCCGGGCA CGTTCACGGT GAAGTCGGCT GGTCATGCTT GGGATGGTCC GGCGAGCATG AGCGCGGACA TGCCGACATT CGCGCAGGAC ACGCTTGGCC GCGTGCCAAA GCTGGTCCGC GCGACGGACG GCCACGCGGC CGCGGGATTC GAAGGCGAAA TTCAAAAGCC ATCCGGGCCG GTATCGAACG TGTCGAGCGA CGTGGCCGGC CAACTGCCCG CCGTCGATGC CGACCAGTTC GAGAGACTGG CGGTGCGGTT CATCAAGAAA AACGTATAG
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Protein sequence | MSIAKTLRNF ASGLIDGNPR PVDLHFGRAQ RAVGHLLALH HADISEGLMS GIEGQLTCVS AHDHLSPALF LGLPVSVRVT TDRGGVRAIN AIVREVRTGQ SDGELTVYQL QVCDTLSLME DRTNARVFRS RSVPEILTTL MNEWKQRSYA LARAFDFDLS GLQADRYPVR ELTRQVNESD ARFIRRLLRR EGITVFAKAE PVGRVNGMTD EPPVHTLVFC DDPHCLKEAP AGALRLHPRD AGAAQRDTVT LFAHRQRLSS GKVRRPSWDY KTARIDDSMA VTSLHQGESG NDLAHLLSDV AIDIPHVGDS WNDHDRITRD RILAHQFEAE RYDGISNVRD LPVGHWFTLT GDPELDMKPI EHRRFVVTSV RHDIHNNLPT QLASRTQGLF AASRNLAQTG GPTPADVAEQ ADTRYENRFT CVRRGVPLKP AYDPKIDVPP AHLLTGTIVG TQGEEVFCDS AGRVRVRIHG YDPADHTHAQ GAGTNGRAGD SAPIRVGANL AGGNFGTLFL PRVGMEVLLG CLAGDPDRLV IIGVLSNGAN PPATFSHTGA LPGNRFLSGI KTKEINGRRY NQLRLDDTPS QISAQLASEH AHTELNLGYL TQPRENGHGE ARGEGAELRT DAAAALRAAR GILLSTYART RATGGQLDRD ELIRLLDQCT ELFKSLGDYA GQHGGQSADT SGQDNVASAF RNWTPGGAPS GAAGDACALL AFGAQSGALH VTPKTHVIHA GENIDQVAQQ HVQVTSGERI NLHAGRGVAM FAHGDGVSAI ANQGKVTLQS QNDDTRVESA KNIQLTAAGG KLVGTASDEV VLVTSGGAYL RLRGGDIELG CPGTFTVKSA GHAWDGPASM SADMPTFAQD TLGRVPKLVR ATDGHAAAGF EGEIQKPSGP VSNVSSDVAG QLPAVDADQF ERLAVRFIKK NV
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