Gene BamMC406_3371 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3371 
Symbol 
ID6179214 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp286145 
End bp288913 
Gene Length2769 bp 
Protein Length922 aa 
Translation table11 
GC content65% 
IMG OID641683140 
Producttype VI secretion system Vgr family protein 
Protein accessionYP_001810054 
Protein GI172062403 
COG category[S] Function unknown 
COG ID[COG3501] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGATAG CAAAAACGCT CCGTAATTTT GCGTCTGGTC TGATTGACGG AAACCCGCGG 
CCAGTCGATC TCCATTTCGG GCGCGCGCAA CGCGCGGTCG GCCATCTGCT GGCGCTCCAT
CACGCCGATA TCTCCGAAGG GCTGATGTCC GGAATCGAAG GGCAGCTGAC CTGCGTGTCC
GCCCACGACC ATCTGTCGCC TGCGCTGTTT CTCGGCCTGC CCGTGTCGGT TCGTGTGACG
ACCGATCGGG GCGGCGTACG CGCGATCAAT GCGATCGTGC GCGAAGTGCG GACCGGCCAA
TCCGACGGCG AGCTGACCGT CTATCAATTG CAGGTGTGTG ACACGCTGTC GTTGATGGAG
GACCGCACGA ACGCCCGCGT GTTCCGCTCG CGCAGCGTGC CGGAAATCCT CACGACGCTG
ATGAACGAAT GGAAACAGCG CAGCTACGCA CTCGCGCGCG CATTCGATTT CGACCTGTCC
GGGCTGCAGG CCGATCGCTA TCCGGTGCGC GAGCTCACGC GGCAGGTCAA CGAATCGGAC
GCGCGCTTCA TCCGGCGTCT GCTGCGCCGG GAAGGCATCA CGGTCTTCGC GAAGGCGGAG
CCGGTCGGAC GCGTGAACGG CATGACCGAC GAGCCGCCGG TTCACACGCT CGTATTTTGC
GACGATCCGC ATTGTTTGAA GGAGGCACCG GCCGGTGCGC TGCGCCTTCA CCCTCGCGAT
GCGGGCGCTG CGCAGCGCGA CACGGTGACG CTCTTTGCGC ACCGCCAGCG CCTGTCGTCG
GGCAAGGTCC GCCGTCCGTC GTGGGACTAC AAGACGGCTC GCATCGACGA TTCCATGGCC
GTCACCAGCC TCCATCAGGG TGAATCGGGA AACGATCTGG CACACCTGCT GAGCGACGTC
GCGATCGACA TCCCGCATGT CGGCGATTCG TGGAACGACC ACGACCGCAT CACGCGCGAC
CGGATACTGG CTCACCAGTT CGAAGCCGAG CGATACGACG GGATCAGCAA CGTGCGCGAT
TTGCCGGTTG GCCACTGGTT CACGCTGACG GGCGACCCGG AGCTGGATAT GAAGCCGATC
GAGCATCGTC GGTTCGTCGT CACGTCGGTT CGACACGACA TCCACAACAA CTTGCCAACG
CAGCTCGCAA GTCGGACGCA GGGACTCTTC GCGGCGAGCC GTAACCTGGC GCAAACCGGT
GGGCCGACGC CTGCCGATGT TGCCGAACAA GCGGACACGC GCTACGAGAA CCGCTTCACG
TGCGTACGGC GCGGCGTGCC GCTCAAACCC GCCTACGATC CGAAGATCGA TGTGCCGCCG
GCTCACCTGC TGACCGGCAC GATCGTCGGC ACGCAGGGCG AGGAAGTGTT TTGCGACAGC
GCCGGCCGCG TGCGCGTGCG GATTCATGGT TACGATCCGG CCGATCATAC GCACGCGCAA
GGCGCCGGAA CGAACGGCCG GGCCGGTGAC AGCGCACCCA TTCGCGTCGG GGCAAATCTG
GCGGGCGGCA ACTTCGGGAC GCTCTTCCTG CCCCGCGTCG GCATGGAAGT CCTGTTGGGA
TGTCTTGCAG GCGACCCGGA CCGGCTGGTC ATCATCGGCG TCCTGAGCAA TGGCGCGAAC
CCGCCTGCGA CCTTCAGCCA TACCGGCGCG CTTCCCGGCA ACCGTTTCCT TTCCGGCATC
AAGACCAAGG AAATCAACGG CAGGCGTTAT AACCAGCTTC GCCTGGACGA CACGCCGTCG
CAAATCTCGG CGCAGTTGGC GAGCGAACAT GCGCATACCG AATTGAATCT CGGGTATCTG
ACGCAGCCGC GAGAAAACGG ACATGGGGAG GCGCGCGGCG AAGGCGCGGA GCTGCGTACC
GATGCCGCCG CCGCGTTGCG CGCCGCCCGC GGCATCCTGC TGTCGACCTA TGCGCGCACA
CGGGCCACCG GTGGTCAGCT CGATCGCGAT GAACTGATTC GCCTGCTCGA TCAATGCACC
GAACTCTTCA AATCGCTCGG CGATTACGCC GGCCAGCACG GCGGGCAGTC CGCCGACACC
AGCGGTCAGG ACAACGTCGC CAGTGCGTTC CGTAACTGGA CGCCCGGCGG TGCACCTTCC
GGCGCGGCCG GCGATGCGTG CGCGCTGCTC GCGTTCGGCG CGCAGTCCGG GGCGCTCCAC
GTCACGCCCA AAACGCACGT CATCCATGCG GGCGAGAACA TCGATCAGGT CGCGCAGCAA
CATGTGCAGG TCACGAGCGG CGAGCGCATC AATCTGCATG CCGGTCGCGG CGTCGCGATG
TTTGCGCACG GCGACGGCGT GTCGGCGATC GCGAATCAGG GGAAGGTCAC GCTCCAGTCG
CAGAACGACG ATACGCGCGT CGAGTCGGCG AAGAACATTC AATTGACCGC GGCGGGCGGA
AAGCTCGTTG GCACCGCGAG CGATGAAGTC GTGCTCGTTA CGTCCGGTGG CGCGTATCTC
AGGCTGCGCG GCGGCGATAT CGAGCTGGGT TGCCCGGGCA CGTTCACGGT GAAGTCGGCT
GGTCATGCTT GGGATGGTCC GGCGAGCATG AGCGCGGACA TGCCGACATT CGCGCAGGAC
ACGCTTGGCC GCGTGCCAAA GCTGGTCCGC GCGACGGACG GCCACGCGGC CGCGGGATTC
GAAGGCGAAA TTCAAAAGCC ATCCGGGCCG GTATCGAACG TGTCGAGCGA CGTGGCCGGC
CAACTGCCCG CCGTCGATGC CGACCAGTTC GAGAGACTGG CGGTGCGGTT CATCAAGAAA
AACGTATAG
 
Protein sequence
MSIAKTLRNF ASGLIDGNPR PVDLHFGRAQ RAVGHLLALH HADISEGLMS GIEGQLTCVS 
AHDHLSPALF LGLPVSVRVT TDRGGVRAIN AIVREVRTGQ SDGELTVYQL QVCDTLSLME
DRTNARVFRS RSVPEILTTL MNEWKQRSYA LARAFDFDLS GLQADRYPVR ELTRQVNESD
ARFIRRLLRR EGITVFAKAE PVGRVNGMTD EPPVHTLVFC DDPHCLKEAP AGALRLHPRD
AGAAQRDTVT LFAHRQRLSS GKVRRPSWDY KTARIDDSMA VTSLHQGESG NDLAHLLSDV
AIDIPHVGDS WNDHDRITRD RILAHQFEAE RYDGISNVRD LPVGHWFTLT GDPELDMKPI
EHRRFVVTSV RHDIHNNLPT QLASRTQGLF AASRNLAQTG GPTPADVAEQ ADTRYENRFT
CVRRGVPLKP AYDPKIDVPP AHLLTGTIVG TQGEEVFCDS AGRVRVRIHG YDPADHTHAQ
GAGTNGRAGD SAPIRVGANL AGGNFGTLFL PRVGMEVLLG CLAGDPDRLV IIGVLSNGAN
PPATFSHTGA LPGNRFLSGI KTKEINGRRY NQLRLDDTPS QISAQLASEH AHTELNLGYL
TQPRENGHGE ARGEGAELRT DAAAALRAAR GILLSTYART RATGGQLDRD ELIRLLDQCT
ELFKSLGDYA GQHGGQSADT SGQDNVASAF RNWTPGGAPS GAAGDACALL AFGAQSGALH
VTPKTHVIHA GENIDQVAQQ HVQVTSGERI NLHAGRGVAM FAHGDGVSAI ANQGKVTLQS
QNDDTRVESA KNIQLTAAGG KLVGTASDEV VLVTSGGAYL RLRGGDIELG CPGTFTVKSA
GHAWDGPASM SADMPTFAQD TLGRVPKLVR ATDGHAAAGF EGEIQKPSGP VSNVSSDVAG
QLPAVDADQF ERLAVRFIKK NV