| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3327 |
|---|
| Symbol | |
|---|
| ID | 6180198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 236426 |
|---|
| End bp | 238978 |
|---|
| Gene Length | 2553 bp |
|---|
| Protein Length | 850 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641683098 |
|---|
| Product | type VI secretion system Vgr family protein |
|---|
| Protein accession | YP_001810012 |
|---|
| Protein GI | 172062361 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.702291 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAC AAGAACTCGT TCGCGCAATC GCCGGCGGCC TGTTTCAGCA AGGTCGTCTG
CTCAAGCTCG ATACACCGCT GGGCGAGAAT GTGCTGCTGC CCCAGACCGT CCATGGCGCG
TCGCGGCTCG GCCGCGAATT CGCATTGACG GTCGACGCCA TCTCGACTCG CGACAACATC
GAACTGAAAA AGCTGATCGC GCAGCCCGTC ACGCTGTGGA TCCAACAGCA AGGCGACACC
TACCTGCCGT GGCATGGCTA TGTGCAGACC GCGCGTCGGC TCGGCTTCGA CGGCAGCATC
ACCGCATACC AGATTCGTTT CATGTCGTGG CTCGGGTTTC TCCGCTACCG GCGCGACCAG
CGCATCTGGC AGGACCGCAC CGCCGACGAC ATCATTACCG ACGTATTCAA CCAGCATCCG
CAAGCCGGCG GCATGTTCCG TTTCGCGCTC TCCGCACCGC TGCGAAACCG TTCGTTCTGC
ATGCAATTCG AGGACGACTG GCATTTCGTC CATCGTCTAC TCGAGGACGA AGGCCTGTTC
GGCTATTTCG AGCAGGCTCC GGACGGCTCG CACCATACGC TGGTGATCAC CGATTCCTTG
CACTCGTTGC CAGCCGCCAC GCCTGCCCGT GTGCCTTTCC AGCGCGCCGC CTCGAGCGAC
GAGACCCAGG CTCTCGCCGA GTGGTCCAGC ACGCGCACAC TGCAAAGCAG CCGTTACACG
ACGCGCACCT TCGACTACAA GTCACCCGGC ACCGCACTCA ATCCAAAAAG CACCGACGTC
CCGACCAGGC CGGACCAGGG TGAGTTGCCT GATCAGGCCG AGGTCTACAC TTACACGGGC
GCCTATACGT ACGGCCCCCA AGGTGACGGC GACCGTCAGT CGACCATCCG GATGGAAGAA
TGGGAGTCGC GCGCGAAGCG GTTCCACGGC ATCGGCGGCA TGCGCGGCAT CGATGCGGGC
CGGGTGTTCG AACTGACCGA CCATCCCGCG CATCCGCCCA CCGAACATGA CGGCAACCGG
TTTGCCGTCG TCGAGACGGT CTGGTGGATC AGGAACAACA TTCCGGCCAC GCCGTCGCAG
TTTCCGCACG GGCTGGCCGC GCGCTTGGAC GCAATGCGGG CACAGCTCGG CGACGCGGTC
AGCGCGATGA CCGTACGCCA CGCCGACGGC AGCGAGGGTT TCTATCTCAT CGAGGTCGAA
GCCCAGCGCC AGGCGGTGCC GTTCCGCAGT CCGTTCGAAC ATCCGAAGCC CGAGATGCAC
CTGCAGACCG CAACCGTCGC CGGGCCCAAG GGCGAGGAAG TCCATACCGA CGAACTGAAC
CGCATCAAGG TCCGGTTCCA CTGGGATCGC CTTAGCGAAG GCGGCGAGCG CGCATCGTGC
TGGCTTCGCG TCGCATCGTC GGACACGGGC GGCGGGTACG GCAGCGTACA CGTGCCGCGC
ATCGGCGAGG AAGTGATCGT CGACTGGATG TCCGGCGACT GCGACCGGCC GATCGTCACG
GCCCGTCTCT ACAACGGCGC GACCAAACCG CAGTGGCATA CCGACGGCGT GCTGTCGGGC
TTCCGTTCGA AGGAATACGC GGGCAGCGGC TACAACCAGC TCGTGATGGA CGACGCAACC
GGGCAGAACC GCGTGCAGCT CTACAGCAGC ATGGCGAACA GCGCACTGCA CATCGGTTAT
CTGATCGAGC AGTCCGGCAA TACGCGCGGC GCTTACGTCG GCAGCGGCTT CGACCTGCGG
TCCGATGCCT ACGGCGCCGT GCGCGCGAGC CAGGGCCTTT ACGTCACGAC GCATCCGAAG
ACCGTGTCGA GCCAGCCGCT CGACGTCCGT GAGGCGCAGC AACAGCTCGT CGGCGGCGAA
AGCCTGCTCG AATCGTTGTC CGGCGCGAGC GAAGCCCATC AGGCCGACAC GCTGCAGCCC
GGTCGCGATG CGCTGAAGAC GTTTACCGAC GCAACGCAGC AGAGCGCGTC CGGCACGGCT
TCGGGCGGAC GCACGGCGGG TGGCGGCACC GGCAACGCGA ACGCATTCGC GCAGCCCGTG
ATGCTGTTCG GCAGTCCGGC CGGCATCGGG ATGGCCAGCC AGCAGTCGTT GCAGATGGTC
GCGGACAAGC ACGTCAACGT CATCAGCGGC CAGAGCACGC ACATCGCAGC CGGAAAATCG
CTGATCGCGA GCATGATCTC GTCGGTGAGC CTGTTCGCGC AGAACTCGGG AATCAAGCTG
TTTGCCGGCA AGGGCAAGGT CGAGATCCGC GCGCATGACG ACGACGTGCA ACTCACTGCG
CAGAAGACTG TGAAGGTCGT CGCCGCCACC GCACAAATCG ACATCGCGTC GAAGCAGCCG
ATCCTGTTGA CGTCTGGCGG TGCATACATT CGCATCGGTA ACGGTAGCAT CGAGATCCAC
GCGCCCGGGA AAGTGGATTT CAAGGGAGGT AACCACAGCT TCTCGGGCCC GACCAGCATC
GACTATCCGC TGCCACGCCT GCCCGAAGGC GTATGTTCGG AATGTCGTCG CAGCGCCGCG
AAAATGAAAT CCGCACTGAC GCCCCGCACA TGA
|
|---|
| Protein sequence | MNSQELVRAI AGGLFQQGRL LKLDTPLGEN VLLPQTVHGA SRLGREFALT VDAISTRDNI
ELKKLIAQPV TLWIQQQGDT YLPWHGYVQT ARRLGFDGSI TAYQIRFMSW LGFLRYRRDQ
RIWQDRTADD IITDVFNQHP QAGGMFRFAL SAPLRNRSFC MQFEDDWHFV HRLLEDEGLF
GYFEQAPDGS HHTLVITDSL HSLPAATPAR VPFQRAASSD ETQALAEWSS TRTLQSSRYT
TRTFDYKSPG TALNPKSTDV PTRPDQGELP DQAEVYTYTG AYTYGPQGDG DRQSTIRMEE
WESRAKRFHG IGGMRGIDAG RVFELTDHPA HPPTEHDGNR FAVVETVWWI RNNIPATPSQ
FPHGLAARLD AMRAQLGDAV SAMTVRHADG SEGFYLIEVE AQRQAVPFRS PFEHPKPEMH
LQTATVAGPK GEEVHTDELN RIKVRFHWDR LSEGGERASC WLRVASSDTG GGYGSVHVPR
IGEEVIVDWM SGDCDRPIVT ARLYNGATKP QWHTDGVLSG FRSKEYAGSG YNQLVMDDAT
GQNRVQLYSS MANSALHIGY LIEQSGNTRG AYVGSGFDLR SDAYGAVRAS QGLYVTTHPK
TVSSQPLDVR EAQQQLVGGE SLLESLSGAS EAHQADTLQP GRDALKTFTD ATQQSASGTA
SGGRTAGGGT GNANAFAQPV MLFGSPAGIG MASQQSLQMV ADKHVNVISG QSTHIAAGKS
LIASMISSVS LFAQNSGIKL FAGKGKVEIR AHDDDVQLTA QKTVKVVAAT AQIDIASKQP
ILLTSGGAYI RIGNGSIEIH APGKVDFKGG NHSFSGPTSI DYPLPRLPEG VCSECRRSAA
KMKSALTPRT
|
|---|
| |