Gene BamMC406_3308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3308 
Symbol 
ID6179854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp218995 
End bp220011 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content66% 
IMG OID641683080 
Product1-aminocyclopropane-1-carboxylate deaminase 
Protein accessionYP_001809994 
Protein GI172062343 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2515] 1-aminocyclopropane-1-carboxylate deaminase 
TIGRFAM ID[TIGR01274] 1-aminocyclopropane-1-carboxylate deaminase
[TIGR01275] pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.951814 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0253505 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTGC AACGCTTCCC CCGTTATCCG CTGACGTTCG GCCCCACGCC GATCCAGCCG 
CTCAAGCGCC TGAGCGCGCA CCTCGGCGGC AAGGTCAAGT TGTATGCGAA ACGCGAGGAC
TGCAACAGCG GTCTCGCGTT CGGTGGCAAC AAGACGCGCA AGCTCGAATA CCTGATCCCC
GACGCGCTCG CGCAGGGTGC GGACACGCTC GTGTCGATCG GCGGCGTCCA GTCGAACCAG
ACGCGCCAGG TCGCGGCCGT CGCCGCGCAT CTCGGGATGA AATGCGTGCT CGTGCAGGAG
CACTGGGTCA ACTACGACGA TCCCGTCTAC GACCGCGTCG GCAATATCCA GCTATCGCGG
ATGATGGGCG CCGACGTGCG GCTCGTTGCC GACGGCTTCG ACATCGGCAT CCGCCGTAGT
TGGGAAGAAG CGATGGAGAG CGTGCGGCAG GCGGGCGGCA AGCCGTATCC GATCCCAGCC
GGATGCTCCG AGCATCCGCT CGGCGGGCTC GGGTTCGTCG GCTTCGCGGA AGAAGTGCGC
GCGCAGGAAG CAGAACTCGG ATTCAAGTTC GACTACATCG TCGTGTGCTC GGTGACGGGC
AGCACGCAGG CCGGCATGGT CGTCGGCTTC GCGGCCGACG GGCGCGCGGA TCGCGTGATC
GGGATCGACG CGTCGGCGAC GCCGGAGAAA ACTCATGCGC AGATCACGCG CATCGCGCGG
CATACGGCTG AAATCGTCGA GCTCGGGCGT CGCATCGACG AGCAGGACGT CGTGCTCGAC
ACGCGCTACG CGGGCCCGGA ATACGGGCTG CCGAACGACG GCACGCTCGA GGCGATCCGG
CTATGCGCAC GGCTCGAAGG CGTACTGACC GATCCCGTCT ATGAAGGCAA GTCGATGCAC
GGGATGATCG ACAAGGTGCG GCTCGGCGAA TTCGAGCCGG GCTCGAAGGT GCTGTATGCG
CACCTGGGCG GCGTGCCGGC GTTGAGCGCG TATGCGGAGA TTTTCCGCAA CGGTTGA
 
Protein sequence
MNLQRFPRYP LTFGPTPIQP LKRLSAHLGG KVKLYAKRED CNSGLAFGGN KTRKLEYLIP 
DALAQGADTL VSIGGVQSNQ TRQVAAVAAH LGMKCVLVQE HWVNYDDPVY DRVGNIQLSR
MMGADVRLVA DGFDIGIRRS WEEAMESVRQ AGGKPYPIPA GCSEHPLGGL GFVGFAEEVR
AQEAELGFKF DYIVVCSVTG STQAGMVVGF AADGRADRVI GIDASATPEK THAQITRIAR
HTAEIVELGR RIDEQDVVLD TRYAGPEYGL PNDGTLEAIR LCARLEGVLT DPVYEGKSMH
GMIDKVRLGE FEPGSKVLYA HLGGVPALSA YAEIFRNG