| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3292 |
|---|
| Symbol | |
|---|
| ID | 6179985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 203274 |
|---|
| End bp | 205781 |
|---|
| Gene Length | 2508 bp |
|---|
| Protein Length | 835 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641683066 |
|---|
| Product | fimbrial biogenesis outer membrane usher protein |
|---|
| Protein accession | YP_001809980 |
|---|
| Protein GI | 172062329 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0249983 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAACT TCACAAAGGA ACGGGATGTA TGGACGGCCG CGCAGATCGG CATGCCGTGC
CTTGCGTTGC TTGGCCTGAT GCTGCCGACG CACGGCCACG CGGTGGAGTT CAACGAGTCC
TTTCTGCGCA AGGGGGAAGG GCCGGTCGAG CTGAGCTATT TCGAGAGTGG CAGTTCGGTG
CTGCCCGGCA GCTATGACGT CGACGTCTAC CTGAATCACA CGCTGGTCAA GCGTCAGGAT
GTGGCGTTTC GTGCCGATGC CGAAGGTACC GTCAAGCCGG CGGTGACCGT CGGGCTGTTG
CGCACCGCGG GCGTTAACGT CGCGCGGCTC GAGAAGGACG GGCGTATCGC CGCCGGTGCG
GACGACGAGA CGATCGTCGA CCTCCCCACC GTGGCGGACG GCGCTTCGGT GGAGTTCGAG
TCCAATACGC TGTCGCTGAA CATCAGTTTT CCACAACTGT ATGTGTCGCG AACCTCGCGC
GGCTACGTGG ATCAGTCGTT GTGGGACGAT GGCGTCCCCG CCTTGTACAG CGACTATCAG
GTCAGCTACA GCCGCAACGA TAGCCACGGC CAAAGCAACG AGTATTACTT CGTTGGCTTG
CGCAACGGCT TCAATGCCGG AGGCTGGCGT TTCCGCAACG AATCCACGCT TACCGGCACC
ACGGGTGCGG GCAGCCGCTT TAGCAGCAAC CGCAGCTACG TGGAGCGCGA CATCCGGCGC
TTGCGCAGCA AGGTGGCGGC CGGCGAGCTG TATACGTCGG GCGACATCTT CGACAGCGTG
CGCTTCGTCG GCGCGCAGAT CGGCACCGAT CTCGGTATGC TGCCCGACAG TGAAGTCGGC
TTCGCGCCGG TCGTGCGCGG GATTGCCGAG AGCAATGCGG TGGTGGAAGT GCGGCAGAAC
GGCTACGTGA TCTATTCGAC GCCGGTGCCG CCCGGTGCGT TCGAGATCAC CGACATCTAT
CCGAGCGGCT CGAACGGCGA CCTCGAGATC AGGATCACCG AGTCCGACGG ACGCGTGCGC
CGGTTCACCC AGCCGTACTC GTACCTGCCG GTGATGGTTC GGCGCGGCAG CCTGCGGTAC
GCATTTTCTG CCGGTCAATA TCGCGTCCAA GGCCAGTCGA GCCCGAAGTT CACGCAGGGC
ACGCTGGTGT ACGGCGTGTC CGACAACTTC ACCGGCTACG GCGGCGTTAT CGCGGCGGAC
AACTACGTGG CGGCCGCCCT CGGCATCGGC GTGAACACGC GTATCGGCGG CATGTCGCTG
GACGTCACGG CGAGCCGGTC GCGCACGTCG GTTGGTACCC GGCAAGGGCA GAGCTTGCGG
TTCCTGTATT CGAAGACGCT GCATTCGACC AACACCACGT TCACGATGGT CGGCTATCGC
TATTCGACGG ACGGCTACCG TACGTTGAGC CAGCACGTGG AGGACACGGA TCGTTCGTAC
GGGCCGCGCG TCGCGCGTCA GAAAAGCCGC CTGGACGTGA ACGTCAACCA GCCGCTCGGG
AGCGGTTCGA TGTTCGCCGG CGTAGGCGAC ACGACCTACT GGAACGGCGA AGGGCGCAGC
CGGCGCCTGC AGGTCGGCTA CAGCAACAGC TACAAGAACA TCAGTTACAG CTTGTCGGCG
TCGCACATCC AGGAGTCCGG GCCGTTCGGG CGGCCGGACA CGCAGTTCAA CGTGTCGGTC
AGCATTCCGC TGGGCAAGGC GTCGAGCACG CATCGCCTGT ACGCGAACGC GGTTTCGTCG
ACGCGCGGTG ACTTCAACAT GCAGACCGGG GTGTCGGGTT ACCTGAATGA CAGCAATACC
GTCAATTACG GCGTGCAGGC CGGCTACAGC CGCGACGGCG GCGGCTCGGG CGGCATCAGC
GCAGGCTGGG ATACGCCGAA CGCGAAGCTG ACCGGCAACT TCACGCAGGA TCGCTCGGGC
CGGCATTTCG ACGCGGGCGC ATCGGGCTCC GTCGTCGTGC ATGGCGGCGG TGTCACGCTC
GGCCAGCCGC TCGGCGAGAC GTTCGCGGTG GTTGAGGTGC CGAAGGTACG CGACGTGACG
TTCGGCGGAG CGCCGACGGT GCGCACCGAC CGGCGCGGCT ACGCGATCGT GCCGTATCTG
CAGCCGTACC GACAGAACTG GCTGAACGTC GATTCGGCGA GTATCGGCAC GCATACGGAG
ATCGCCGACA ACGCGAAGAT GGTGGTGCCC ACGCGCGGGG CGATCGTGAA GACCCGCTTC
GAAGCGGAGT CGGGGCGGCG CGTGCAGTTC GAGTTGTCCC GGGACGCGGG CGGCAAGGTG
CCGTTCGGCG CGCAGGCGTA CGACGCGAAG GGCAAGCTGC TCGGCATGGT GGACAACCAG
TCGCGTCTGC TGGTGTTCGG CATCGAGGAC CAGGGCAGCA TCGATGTGCA GTGGGGCAAC
AATAGCTGCA AGGTGTCCTA TCAATTGCCG ACGCTGAACA AGGAACTGGC GTATGAGCGT
CGGGCGGCAA TGTGCGTGGG CGCCGGCACG GTGGTCGGCG CCCAGTGA
|
|---|
| Protein sequence | MENFTKERDV WTAAQIGMPC LALLGLMLPT HGHAVEFNES FLRKGEGPVE LSYFESGSSV
LPGSYDVDVY LNHTLVKRQD VAFRADAEGT VKPAVTVGLL RTAGVNVARL EKDGRIAAGA
DDETIVDLPT VADGASVEFE SNTLSLNISF PQLYVSRTSR GYVDQSLWDD GVPALYSDYQ
VSYSRNDSHG QSNEYYFVGL RNGFNAGGWR FRNESTLTGT TGAGSRFSSN RSYVERDIRR
LRSKVAAGEL YTSGDIFDSV RFVGAQIGTD LGMLPDSEVG FAPVVRGIAE SNAVVEVRQN
GYVIYSTPVP PGAFEITDIY PSGSNGDLEI RITESDGRVR RFTQPYSYLP VMVRRGSLRY
AFSAGQYRVQ GQSSPKFTQG TLVYGVSDNF TGYGGVIAAD NYVAAALGIG VNTRIGGMSL
DVTASRSRTS VGTRQGQSLR FLYSKTLHST NTTFTMVGYR YSTDGYRTLS QHVEDTDRSY
GPRVARQKSR LDVNVNQPLG SGSMFAGVGD TTYWNGEGRS RRLQVGYSNS YKNISYSLSA
SHIQESGPFG RPDTQFNVSV SIPLGKASST HRLYANAVSS TRGDFNMQTG VSGYLNDSNT
VNYGVQAGYS RDGGGSGGIS AGWDTPNAKL TGNFTQDRSG RHFDAGASGS VVVHGGGVTL
GQPLGETFAV VEVPKVRDVT FGGAPTVRTD RRGYAIVPYL QPYRQNWLNV DSASIGTHTE
IADNAKMVVP TRGAIVKTRF EAESGRRVQF ELSRDAGGKV PFGAQAYDAK GKLLGMVDNQ
SRLLVFGIED QGSIDVQWGN NSCKVSYQLP TLNKELAYER RAAMCVGAGT VVGAQ
|
|---|
| |