Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3291 |
Symbol | |
ID | 6179984 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 202435 |
End bp | 203151 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641683065 |
Product | Pili assembly chaperone, N-terminal |
Protein accession | YP_001809979 |
Protein GI | 172062328 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0353367 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGAT TCCACTTTGC CGGGCTGGCC CTGGCCAGCT CGTTGCTGTT GTCTTCAGGC GTCTCGCTCG CCGGCATCAC GCTCGACGGA ACGCGCGTCG TGTTGGCCGC GCCGAGCAAA GAGGCGTCGG TGATGGTCCG GAACCGCGCG CCGGCTGACG TAATGATTCA GACGTGGATG GATGCGAGCG ACGGGAAGTC GGACGTGCCA TTCGCGATCA CACCGGCGCT GAACCGCCTG GGTGGGGAGA AGCAGCAGAC GCTGCGGATC CTCTACTACG GCCAGGGTCT GCCCGTAGAT CGCGAGTCGG TGTTCTGGCT CAACGTGCAG GAGATCCCGC AGAAAGTGAA GGGCGACAAC ACGCTGCAGA TTGCCGTGCG TCAGCGCATC AAGTTCTTCT ACCGGCCTAC CGGCTTGTCC GGAAAAGTCG AGGAAGCGCC CGCGCAACTG CGCTGGAGAC TCGTTCAGCG CGACGGTCGC GCGCAACTCG AAGTGAGCAA TCCGTCGGCT TACTTCGTGT CGCTGGCTTC GGTCAAGGTG CGAAGCGGCG GTCGGGACTA TGCCGCGGAG GCCGAGATGG TGCCGCCGTC CTCGACGCGT CTGTTTGCCG TCAAGGATCT GCCCGCCGGC GCTGCTTCAG CGGGCATAAA GGTCCACTTC GAGTCGATCA ACGACTACGG CGCCGTCGAG CCGCATGACG GCACCACCAC CGGTTGA
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Protein sequence | MKRFHFAGLA LASSLLLSSG VSLAGITLDG TRVVLAAPSK EASVMVRNRA PADVMIQTWM DASDGKSDVP FAITPALNRL GGEKQQTLRI LYYGQGLPVD RESVFWLNVQ EIPQKVKGDN TLQIAVRQRI KFFYRPTGLS GKVEEAPAQL RWRLVQRDGR AQLEVSNPSA YFVSLASVKV RSGGRDYAAE AEMVPPSSTR LFAVKDLPAG AASAGIKVHF ESINDYGAVE PHDGTTTG
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