Gene BamMC406_3291 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3291 
Symbol 
ID6179984 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp202435 
End bp203151 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content64% 
IMG OID641683065 
ProductPili assembly chaperone, N-terminal 
Protein accessionYP_001809979 
Protein GI172062328 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3121] P pilus assembly protein, chaperone PapD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0353367 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGAT TCCACTTTGC CGGGCTGGCC CTGGCCAGCT CGTTGCTGTT GTCTTCAGGC 
GTCTCGCTCG CCGGCATCAC GCTCGACGGA ACGCGCGTCG TGTTGGCCGC GCCGAGCAAA
GAGGCGTCGG TGATGGTCCG GAACCGCGCG CCGGCTGACG TAATGATTCA GACGTGGATG
GATGCGAGCG ACGGGAAGTC GGACGTGCCA TTCGCGATCA CACCGGCGCT GAACCGCCTG
GGTGGGGAGA AGCAGCAGAC GCTGCGGATC CTCTACTACG GCCAGGGTCT GCCCGTAGAT
CGCGAGTCGG TGTTCTGGCT CAACGTGCAG GAGATCCCGC AGAAAGTGAA GGGCGACAAC
ACGCTGCAGA TTGCCGTGCG TCAGCGCATC AAGTTCTTCT ACCGGCCTAC CGGCTTGTCC
GGAAAAGTCG AGGAAGCGCC CGCGCAACTG CGCTGGAGAC TCGTTCAGCG CGACGGTCGC
GCGCAACTCG AAGTGAGCAA TCCGTCGGCT TACTTCGTGT CGCTGGCTTC GGTCAAGGTG
CGAAGCGGCG GTCGGGACTA TGCCGCGGAG GCCGAGATGG TGCCGCCGTC CTCGACGCGT
CTGTTTGCCG TCAAGGATCT GCCCGCCGGC GCTGCTTCAG CGGGCATAAA GGTCCACTTC
GAGTCGATCA ACGACTACGG CGCCGTCGAG CCGCATGACG GCACCACCAC CGGTTGA
 
Protein sequence
MKRFHFAGLA LASSLLLSSG VSLAGITLDG TRVVLAAPSK EASVMVRNRA PADVMIQTWM 
DASDGKSDVP FAITPALNRL GGEKQQTLRI LYYGQGLPVD RESVFWLNVQ EIPQKVKGDN
TLQIAVRQRI KFFYRPTGLS GKVEEAPAQL RWRLVQRDGR AQLEVSNPSA YFVSLASVKV
RSGGRDYAAE AEMVPPSSTR LFAVKDLPAG AASAGIKVHF ESINDYGAVE PHDGTTTG