| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3287 |
|---|
| Symbol | |
|---|
| ID | 6179517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 195604 |
|---|
| End bp | 196275 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641683061 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001809975 |
|---|
| Protein GI | 172062324 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.404787 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAAT TCTTTGTGCG CGTGATGGTA GCCGACGATC ATCCGGCATC CGCGCTCGGT
ATCTCGCAGG CATTGCAGGG CAACAGCACG ATCAAGCTCG TGGGCACCGT TTCGAACTCG
ACGGACCTGG TTGCGGCGCT CGACGCGCAG CAGAGCGACG TGCTTGTGCT CGACTACGTG
ATGCCGGGCG GCAAGTACGG CGACGGGCTC GTGCTGCTGT CGTTCCTGCA GCGTCGCTAT
CCCGCGCTGC ATATCGTGAC GATCACGATG ATCGACAATC CGAGCGTGCT GCGCGCGATC
CACAAGCAGG GCGTGAGTTG CATCCTCAGC AAGTCTGATG CGATTTCCCA CCTGATCGGC
GCCGTGCATG CCGCGTACGT CGGCGCGAAC TACATGTCGC CGTATATCAA GCAGCTCCTG
CAGGACATCG AATCCGAGCC CGCCACTCGC GCACTGACGA CGCGCGAGAT CGAGGTTGTC
CGTTTGTTCG GCGCGGGCTA CACGGTGGGA GAAATCGCCG CGCAGCTCCA TCGCAGCAAG
CAAACCATCA GTTCGCAGAA GTCGAGCGCG ATGAAGAAGC TCGGCATCGT CCGCGACGCG
GATCTGATCC GCTATAACGA CGAGCAAAAT CTCTCCGGCG CGCCTGACGG CGATGCGTCG
TCGTCGACGT GA
|
|---|
| Protein sequence | MDEFFVRVMV ADDHPASALG ISQALQGNST IKLVGTVSNS TDLVAALDAQ QSDVLVLDYV
MPGGKYGDGL VLLSFLQRRY PALHIVTITM IDNPSVLRAI HKQGVSCILS KSDAISHLIG
AVHAAYVGAN YMSPYIKQLL QDIESEPATR ALTTREIEVV RLFGAGYTVG EIAAQLHRSK
QTISSQKSSA MKKLGIVRDA DLIRYNDEQN LSGAPDGDAS SST
|
|---|
| |