| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3235 |
|---|
| Symbol | |
|---|
| ID | 6181265 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 139913 |
|---|
| End bp | 141505 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641683010 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001809924 |
|---|
| Protein GI | 172062273 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2205] Osmosensitive K+ channel histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.766371 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.309803 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCAG ACCAGCCGCA GCCCAACCCT TCGGACCAAC CGCCGGCCCA GCACGAGCAG
CCGCTGCTCG ACCGCTATGC GGAGTTCCGC TTCCAGACGG TCGTCGCGTC GATCACCGAC
TATGCAGTGT TCATGCTCGA CCCGCACGGC AACGTCGCGA CATGGAACGC GGGCGCCGAG
CGCATCAAGG GTTTCCGGAC GGACGAAATC ATCGGCAGCC ATTTCTCCCG CTTCTATCCA
GCCGATGCGA TCGCGGCCGG CCGCCCGGCG CACGCGCTCG AAGCCGCCGC CGCGTACGGT
CACTTCCAGG ACGAAAGCTG GCGCGTACGC AAGGACGGTT CGCGGTTCTG GGCCAGCGTG
ACGATCACGG CAGTACGCGA CGAGTCGCAT CAGTTGCGCG GCTTCATCAA GATCACGCGC
GACATGACCG AGCGCAAGCG CGTGGAGGAA CTCGAAGCGG CCACGCGGCG GCTGGACGTC
TTCATCGCGA CGCTCGCGCA CGAGCTGCGC AACCAGCTCG CGCCGCTGCG GCACACGATC
GGCATCCTGC AGGGCCTGCC GGCGTCCGAA CTGGGCCCGG CGCTCACGCA ATGCAAGGAC
ATCGCGGATC GCCAGATCGA ACAGCTCGTG CGGCTCGTCG ACGATCTGCT CGACATCGGA
CGTATCAAGT CCGACAAGGT GGATCTGAAG AAAGCACCGG TGAACGTGCG CGATATCGTG
TACCGCAGCG TGCAGGGCAT TGAGCCGAAG GTCGACGCGC GCGGGCAGCG GATTATCGTG
CGGCTGCCGC CCGCGCCCGT GATCGTTCAC GGCGACGATG TCCGGCTCGT CCAGGTGCTG
TACAACCTGC TCGACAATGC GTCGAAGTAT TCGCCGAACG GCGAGCGCAT CGAGCTCCAC
GTGCGCACCG AGCAGAACGT GGTTGCGATC CAGATCGTCG ATTACGGGAT CGGCATCGTG
CCCGGCGCGC AGGAATCGAT CTTCGACCCG TTCGAGCAGG AGAATGCCGC GGAGCGCCAC
GCGCCCGGCG GGCTCGGGCT GGGGCTTGCG ATCAGCAAGA AATTCGTCGA CCTGCATGGT
GGCAGCATCA CGGCCGACAG CGCCGGGATC GGCGCGGGGT CGACGTTTAC GGTCCGGCTG
CCGATCGCGG AATCGAATCG TGCGGTCGAG CACGTGCAAA AGGCGCCGGC GCCATCCTCC
ATGCATGCGC TGCGCATCCT GATCGTCGAC GACAACCGCG AATCGGCCGA CACGCTCGCC
ATCCTGATGC AGATCAAGGG CCACACGGCC CGCGTCGCGT ACCACGCGCG CGATGCACTG
TCGATAGCCC GCGAATTCGC GCCGCATCTG ATGCTGATCG ACCTCAGCAT GCCGGACGTC
AGCGGGTTCG AGCTGCTCCA GACGTTGCGC TCGACCGGCG CCGCACCCGA CTCGTACTAT
GTCGCGCTGT CCGGACATGT GCGTTCGTCG GACCGACAGG ACACCACGGA CGCCGGCTTC
CACGATCATT TCGCGAAGCC GATTCCGATC GAGGCGCTGG ACAGGCTGCT CGCGCGCGTG
GAGGACGATG CGCGTCGCCG CGGCCGGCTG TGA
|
|---|
| Protein sequence | MTPDQPQPNP SDQPPAQHEQ PLLDRYAEFR FQTVVASITD YAVFMLDPHG NVATWNAGAE
RIKGFRTDEI IGSHFSRFYP ADAIAAGRPA HALEAAAAYG HFQDESWRVR KDGSRFWASV
TITAVRDESH QLRGFIKITR DMTERKRVEE LEAATRRLDV FIATLAHELR NQLAPLRHTI
GILQGLPASE LGPALTQCKD IADRQIEQLV RLVDDLLDIG RIKSDKVDLK KAPVNVRDIV
YRSVQGIEPK VDARGQRIIV RLPPAPVIVH GDDVRLVQVL YNLLDNASKY SPNGERIELH
VRTEQNVVAI QIVDYGIGIV PGAQESIFDP FEQENAAERH APGGLGLGLA ISKKFVDLHG
GSITADSAGI GAGSTFTVRL PIAESNRAVE HVQKAPAPSS MHALRILIVD DNRESADTLA
ILMQIKGHTA RVAYHARDAL SIAREFAPHL MLIDLSMPDV SGFELLQTLR STGAAPDSYY
VALSGHVRSS DRQDTTDAGF HDHFAKPIPI EALDRLLARV EDDARRRGRL
|
|---|
| |