| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3140 |
|---|
| Symbol | |
|---|
| ID | 6180671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 40258 |
|---|
| End bp | 41349 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641682916 |
|---|
| Product | outer membrane protein (porin) |
|---|
| Protein accession | YP_001809830 |
|---|
| Protein GI | 172062179 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.448151 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAGAA AGACCCTGCT GGCCCTCGCG GCCTGCACGA TCCCGGCCGC GGCCTTCGCG
CAGAGCAGCG TGACGATGTT CGGGCTGCTG GATGCCGGCA TCAGCTATGT CAGCAACGAA
GGCGGCCACG GCAACGCGAA ATTCGACGAC AACATATTCT TCCCGAACCT GCTCGGCTTC
GAAGGCAAGG AGGATCTCGG CGCCGGCACG CGCGCGATCT TCCGGCTCGT CAATCAATTC
TCGCTCGCGA ACGGCTCGAT GATCGGCGGC GGGTTGTTCG CGCGCACAGC CTATGTCGGG
CTGCAGAACG ACCGGTACGG CACGCTGACG CTCGGCAACC AGTACGAGTT CATGGTCGAT
TCGCTGGCCG CGAGCGGCAA CGAGGTCGCG CAGGATCTCG TCGGGCTGTA CGGCTTTCGC
AACGGGCCGT TCGACAAGCT CGCGCTGCCG AACAATCCGA CCGGCGCATT CGACTGGGAC
CGCGTCGCGG GCAGCAATCG CGTCGCGAAT TCGGTCAAGT ACACGAGCGC ATCGATCGCG
GGTCTGACCT TCGGCGCGCT GTACGGCTTC GGGAACGTCG CAGGGTCGGT CGGCGCGAAC
AACACGGTCA GCGTCGGCGC GAGCTACGAC AACGGCCCGT TCGGCGTGGG CGCGGCCTAT
ACGAACCAGA AGTACGGCGC GGCGGACGGG CGGCCGGCCA CCACCGTGCG CAACTGGGGC
GCCGGCGCGC ACTACACGCT CGGCACGGTC ACGGCGAAGG CGCTGTTCAC GACCGTGCAC
AACGCGTGGA ATGGTGCGGG CGCGTGGTCG ACGGAAGCGG GCGCCGCCTG GCATCCGTCG
CCGGTCTGGG TGATCGGCGC GAGCTACACG TACATGAAGG GCAACGACAC GCTCGAGAAC
GCGCATGCGC ACCAGCTCCT GGCTGCCGTC CAGCATTGGT TGTCGAAACG CACGATGGTG
TACGTCGCGG GCGTGCATCA GCGCGCGAGC CGCGGCAGCC ACGCGCAGAT CAACGGCGTG
ATGGACGCGA ACGGCGCGTC GAGCGGCGCG CAGCAGTCGG TCGCGCGGAT CGGGTTCAGT
ACGCGGTTCT GA
|
|---|
| Protein sequence | MTRKTLLALA ACTIPAAAFA QSSVTMFGLL DAGISYVSNE GGHGNAKFDD NIFFPNLLGF
EGKEDLGAGT RAIFRLVNQF SLANGSMIGG GLFARTAYVG LQNDRYGTLT LGNQYEFMVD
SLAASGNEVA QDLVGLYGFR NGPFDKLALP NNPTGAFDWD RVAGSNRVAN SVKYTSASIA
GLTFGALYGF GNVAGSVGAN NTVSVGASYD NGPFGVGAAY TNQKYGAADG RPATTVRNWG
AGAHYTLGTV TAKALFTTVH NAWNGAGAWS TEAGAAWHPS PVWVIGASYT YMKGNDTLEN
AHAHQLLAAV QHWLSKRTMV YVAGVHQRAS RGSHAQINGV MDANGASSGA QQSVARIGFS
TRF
|
|---|
| |