Gene BamMC406_3125 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3125 
Symbol 
ID6180063 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp21260 
End bp22045 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content64% 
IMG OID641682901 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_001809815 
Protein GI172062164 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAACC TGAATGGCAA GACCGCAGTC GTCACGGGCG CCGCAAGCGG CATCGGCAAG 
GAAATCGCAC TGGAGCTGGC CAAGGCGGGC GCGGCGGTCG CGATCGCCGA CCTGAACCAG
GACGGCGCGA ACGCGGTTGC CGACGAGATC AATAAGGCAG GCGGCAAGGC GATCGGCGTC
GCGATGGACG TGACCAATGA GGACGCCGTG AACAGCGGCA TCGACAAGGT CGCCGAAGCG
TTCGGCTCGG TCGACATCCT CGTATCGAAC GCCGGCATTC AGATCGTCAA TCCGATCGAG
AACTACTCGT TCTCCGACTG GAAGAAGATG CAGGCGATCC ATGTCGACGG CGCATTCCTG
ACGACGAAGG CCGCGCTCAA GCACATGTAC AAGGATGATC GCGGCGGCGT CGTGATCTAC
ATGGGCTCGG TGCACTCGCA CGAAGCGTCG CCGCTGAAGT CGGCCTACGT GACGGCCAAG
CACGGCCTGC TCGGCCTCGC GCGCGTGCTG GCGAAGGAAG GCGCGAAGCA CAACGTGCGC
TCGCACGTCG TGTGTCCGGG CTTCGTGCGC ACGCCGCTGG TCGACAAGCA GATTCCGGAG
CAGGCGAAGG AGCTCGGGAT CAGCGAAGAG GAAGTGATCA AGAAGGTGAT GCTCGGCAAC
ACGGTCGACG GCGTGTTCAC GACGGTGCAG GACGTCGCGC AGACGGTGCT GTTCCTGTCG
GCGTTCCCGA GCGCCGCGCT CACGGGGCAG TCGTTCATCG TCAGCCACGG CTGGTTCATG
CAGTAA
 
Protein sequence
MSNLNGKTAV VTGAASGIGK EIALELAKAG AAVAIADLNQ DGANAVADEI NKAGGKAIGV 
AMDVTNEDAV NSGIDKVAEA FGSVDILVSN AGIQIVNPIE NYSFSDWKKM QAIHVDGAFL
TTKAALKHMY KDDRGGVVIY MGSVHSHEAS PLKSAYVTAK HGLLGLARVL AKEGAKHNVR
SHVVCPGFVR TPLVDKQIPE QAKELGISEE EVIKKVMLGN TVDGVFTTVQ DVAQTVLFLS
AFPSAALTGQ SFIVSHGWFM Q